BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944318
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35670.1 | Symbols: | Pectin lyase-like superfamily protein... 1882 0.0
> AT4G35670.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:16914996-16917201 FORWARD LENGTH=1185
Length=1185
Score = 1882 bits (1019), Expect = 0.0
Identities = 1132/1187 (95%), Gaps = 5/1187 (0%)
Strand=Plus/Plus
Query 23 ATGAAAACCATATTGGATATTTCGATCTTGATAAATTTTCTCTGTTTTGGTATTGTGTAC 82
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAAAACCATATTGGATATTTCGATCTTGATAAATTTTCTCTGTTTTGGTATTGTATAC 60
Query 83 GGCCAAAATTACAACGTACTCAATTTTGATGCCAAAGGAGATGGTCAAACTGATGATTCA 142
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCAAAAATTACAACGTACTCAATTTTGATGCCAAAGGAGATGGTCAAACTGATGATTCA 120
Query 143 AAGGCTTTTCTACAAGCATGGACTGCTGCATGTGGCGGAGACGGGGACATAAAAACACTT 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGGCTTTTCTACAAGCATGGACTGCTGCATGTGGCGGAGACGGGGACATAAAAACACTT 180
Query 203 CTTATTCCTTCTGACAAAACATTTTTACTTCAACCTACCGTGTTCCAAGGCCCATGTAAA 262
||||| ||||| | |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 CTTATACCTTCCGGCAAAACATTTTTACTTCAACCTACTGTGTTTCAAGGCCCATGTAAA 240
Query 263 TCTAGTTCGATAAAAGTTCAGTTGGATGGCGCCATCGTTGCACCTAGTGACAAAGTCGCA 322
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 241 TCTAGTTCGATAAAAGTTCAGTTGGATGGCACCATCGTTGCACCTAGTGACAAATTCGCA 300
Query 323 TGGTCGGACCCCATCTCCCGAATGTGGATCAAATTTTCAACTGTGTCTGGTCTAACAATC 382
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 301 TGGTCGGACCCCATCTCCCGAATGTGGATCAAATTTTCAACTGTGTCTGGCCTAATAATC 360
Query 383 GTTGGTTCGGGAACGATTGATAGTCGTGGTTCATCTTTTTGGGAGCTAAATCTGAAAGCT 442
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTTGGTTCGGGAACCATTGATAGTCGTGGTTCATCTTTTTGGGAGCTTAATCTGAAAGCT 420
Query 443 TCTCAACGACCTACAGCATTACATATCAGCAAATGTGACAACCTGAGGATAAACGGGATA 502
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 TCTCAACGACCTACAGCATTACATATCAGCAAATGTGACAACCTTAGGATAAACGGGATA 480
Query 503 ACCTCGATTGATAGTCCAAAAAATCATATATCAATCAAAACATGTAATACTGTTGCAATA 562
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACATCGATTGATAGTCCAAAAAATCATATATCAATCAAAACATGTAATACTGTTGCAATA 540
Query 563 TCAAATATAAATCTTTTTGCACCCGAGACAAGTCCCAATACAGATGGGATTGATATAAGT 622
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 TCAAATATAAATCTTTTTGCACCTGAGACAAGTCCCAATACAGATGGGATTGATATAAGT 600
Query 623 GACTCGACTAATATCAACATATTTGACTCTACAATTCAAACCGGTGACGATTGTATAGCA 682
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 GACTCGACTAATATCAACATATTTGACTCTACAATTCAAACTGGTGACGATTGTATAGCA 660
Query 683 ATCAACAGTGGAAGTTCTAATATTAACATCACTGGAATTAACTGTGGACCTGGTCATGGG 742
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 661 ATCAATAGTGGAAGTTCTAATATTAACATCACTGGAATCAATTGTGGACCTGGTCATGGG 720
Query 743 ATAAGTGTGGGAAGTCTAGGAGCGGGTGGAGCAGAGGCTAAAGTGAGTGATGTTCAAGTG 802
||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 721 ATAAGTGTGGGGAGTTTAGGAGCAGGTGGAGCAGAAGCTAAAGTGAGTGATGTTCAAGTG 780
Query 803 ACTCACTGCACTTTCAATCAGACGACGAATGGAGCTAGAATCAAGACATGGCTGGGTGGA 862
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACACATTGCACTTTCAATCAGACGACGAATGGAGCTAGAATCAAGACATGGCTGGGTGGA 840
Query 863 CAAGGATATGCAAGAAACATAAGTTTTACGGATATTACGCTCATTAACACAAAAAATCCA 922
|||||||||||||||||||||||||||||||| || || ||| |||||||||||||||||
Sbjct 841 CAAGGATATGCAAGAAACATAAGTTTTACGGACATCACACTCGTTAACACAAAAAATCCA 900
Query 923 ATAATAATCGACCAACAATATATAGATAAAGGAAAG-CTTGATGGAGAGGAATCATCAGT 981
|| |||||||||||||| ||||||||||||||| | ||| | |||||||||| ||||
Sbjct 901 ATTATAATCGACCAACATTATATAGATAAAGGAC-GTCTT-AC--AGAGGAATCAGCAGT 956
Query 982 GGCAATTAGTAATGTAAAATATGTCGATTTTCGCGGAACATCGTCAAATAAAAATGCTAT 1041
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGCTATTAGTAATGTAAAATTTGTCGATTTTCGCGGAACATCGTCAAATAAAAATGCTAT 1016
Query 1042 AACGCTTAAATGTAGTGAAACTACACATTGTATAGATGTTGTCATGGATGGAATTGATAT 1101
||||||||||||||| ||||||||||||||| |||| || || |||||||||||||||||
Sbjct 1017 AACGCTTAAATGTAGCGAAACTACACATTGTGTAGACGTCGTTATGGATGGAATTGATAT 1076
Query 1102 TACCATGGCGAATGGAGGAAAACCTAAAGTTAATTGCCAATATGTTGATGGAGAGTCAAG 1161
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1077 TACCATGGCAAATGGAGGAAAGCCTAAAGTTAATTGTCAATATGTTGATGGAGAGTCCAG 1136
Query 1162 TGATACTGATTTGATGCGAGACTGTTTTAAAAATAACACTAGTTCTT 1208
||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1137 TGACACTGATTTGATGCGAGACTGCTTTAAAAATAACACTAGTTCTT 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60491656725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5