BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944321
Length=247
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35655.1 | Symbols: | RPM1-interacting protein 4 (RIN4) fam... 339 1e-92
> AT4G35655.1 | Symbols: | RPM1-interacting protein 4 (RIN4) family
protein | chr4:16910755-16910961 FORWARD LENGTH=207
Length=207
Score = 339 bits (183), Expect = 1e-92
Identities = 199/207 (96%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 21 ATGGCATCAAATAGTGAAGCAAGGCCTCTGCCAAAATTCGGAGAATGGGATGTGAATGAT 80
|||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCATCGAATAGTGACGCAAGGCCTTTGCCAAAATTCGGAGAATGGGATGTGAATGAT 60
Query 81 CCGGCGACGGCAGAGGTATTCACTGTTATATTTAGTAAAGCCGGCGAGGATaaaaaaaCA 140
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CCGGCGACGGCAGAGGGATTCACCGTTATATTTAGTAAAGCCGGCGAGGATAAAAAAACA 120
Query 141 GGTCGTAGCTCCAGCAAGGCACCTTCACAGAGGAAACAAGACGGCGTTAAACCAACCAAG 200
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GGTCGGAGCTCTAGCAAGGCACCTTCACAGAGAAAACAAGACGGCGTTAAACCAACCAAG 180
Query 201 AAATGGCTCTGTTTTACTTTTTCTTGA 227
|||||||||||||||||||||||||||
Sbjct 181 AAATGGCTCTGTTTTACTTTTTCTTGA 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11209708027
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5