BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944324
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35640.1 | Symbols: ATSERAT3;2, SERAT3;2 | serine acetyltran... 1831 0.0
> AT4G35640.1 | Symbols: ATSERAT3;2, SERAT3;2 | serine acetyltransferase
3;2 | chr4:16905579-16908357 REVERSE LENGTH=1624
Length=1624
Score = 1831 bits (991), Expect = 0.0
Identities = 1067/1105 (97%), Gaps = 0/1105 (0%)
Strand=Plus/Plus
Query 6 TCACTCCTTTTGGTCATGGCTTGTATAAACGGCGAGAATTGTGACTTTTCTTCCTCATCA 65
|||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 366 TCACTCTTTTTGGTCATGGCTTGTATAAACGGCGAGAATCGTGATTTTTCTTCCTCGTCA 425
Query 66 TCCTTATCTTCTCTTCCAATGATTGTCTCGCGGAACTTTTCTGCCAGAGACGATGGAGAG 125
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 426 TCTTTGTCTTCTCTTCCAATGATTGTCTCCCGGAACTTTTCTGCCAGAGACGATGGAGAG 485
Query 126 ACCGGTGACGAGTTTCCTTTCGAGAGGGTTTTCCCGGTTTACGCTAGAGGGACCCTTAAT 185
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 486 ACCGGTGACGAGTTTCCTTTCGAGAGGATTTTCCCGGTTTACGCTAGAGGAACCCTTAAT 545
Query 186 CCCGTGGCCGACCCGGTTTTGCTGGATTTTACCAATTCTGGTTATGACCCAATTTGGGAT 245
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 546 CCCGTGGCCGACCCGGTTTTGCTGGATTTTACCAATTCTAGTTATGACCCAATTTGGGAT 605
Query 246 TCTATAAGAGAAGAAGCTAAGCTTGAGGCAGAAGAGGAGCCGATTTTGAGTAGCTTCTTG 305
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 606 TCTATAAGAGAAGAAGCTAAGCTTGAGGCAGAAGAGGAGCCGGTTTTGAGTAGCTTCTTG 665
Query 306 TATGCTAGTATCTTATCACATGACTGTTTAGAGCAAGCATTGAGTTTTGTTCTGGCTAAC 365
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 666 TATGCTAGTATCTTGTCGCATGACTGTTTAGAGCAAGCATTGAGTTTTGTTCTAGCTAAC 725
Query 366 CGTCTCCAAAACCCTACCTTGTTAGCAACTCAACTTATGGATATATTTTGCAATGTTATG 425
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 726 CGTCTCCAAAACCCTACCTTGTTGGCAACTCAGCTTATGGATATATTTTGCAACGTTATG 785
Query 426 GTACATGACAGAGGTATTCAGAGCTCCATTCGTCTTGATGTTCAGGCATTCAAAGACAGA 485
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 786 GTACATGACAGAGGTATTCAAAGCTCGATTCGTCTTGATGTTCAGGCATTCAAAGACAGA 845
Query 486 GATCCTGCTTGTCTATCGTATAGTTCGGCTATTTTACATCTGAAGGGCTATCTTGCACTG 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GATCCTGCTTGTCTATCGTATAGTTCGGCTATTTTACATCTGAAGGGCTATCTTGCACTG 905
Query 546 CAGGCGTATAGAGTTGCACATAAGTTGTGGAAGCAAGGAAGAAAACTATTAGCATTGGCA 605
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 CAGGCGTATAGAGTAGCACATAAGTTGTGGAAGCAAGGAAGAAAACTATTAGCATTGGCA 965
Query 606 TTGCAAAGCCGAGTAAGCGAGGTTTTTGGAATCGATATTCATCCCGCTGCAAGAATTGGG 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CTGCAAAGCCGAGTAAGCGAGGTTTTTGGAATCGATATTCATCCCGCTGCAAGAATTGGG 1025
Query 666 AAAGGAATATTATTGGATCATGGAACTGGTGTGGTCATTGGTGAGACTGCTGTGATAGGC 725
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1026 AAAGGAATATTGTTGGATCATGGAACTGGTGTGGTCATAGGTGAGACTGCTGTGATAGGC 1085
Query 726 GACCGTGTCTCAATTTTGCATGGTGTGACATTAGGAGGAACTGGGAAGGAAACCGGTGAC 785
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1086 GACCGTGTCTCAATTTTGCATGGTGTGACATTAGGAGGAACTGGGAAAGAAACCGGTGAC 1145
Query 786 CGCCATCCAAATATAGGCGATGGTGCTCTTCTTGGAGCATGTGTGACTATACTTGGTAAC 845
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1146 CGCCATCCAAATATAGGCGACGGTGCTCTTCTTGGAGCATGTGTGACTATACTTGGTAAC 1205
Query 846 ATTAGGATAGGCGCTGGAGCAATGGTAGCTGCTGGTTCGCTTGTGTTAAAGGATGTTCCA 905
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 ATTAAGATAGGCGCTGGAGCAATGGTAGCTGCTGGTTCGCTTGTGTTAAAGGATGTTCCT 1265
Query 906 TCGCATAGCATGGTGGCTGGAAATCCAGCGAAACTGATCGGGTTTGTTGATGAGCAAGAT 965
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1266 TCGCATAGCATGGTGGCTGGAAATCCAGCAAAACTCATCGGGTTTGTTGATGAGCAAGAT 1325
Query 966 CCGTCTTTGACTATGGAGCATGATGCTACCAGAGAGTTCTTTCAAAATGTAGCTGTTGCT 1025
|| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CCATCTATGACAATGGAGCATGATGCTACCAGAGAGTTCTTTCAAAATGTAGCTGTTGCT 1385
Query 1026 TATAGAGAGACAATACCAAATGGATCTTTAGTTTCAGGTAGTTGCAGAGAAAAGAGACAC 1085
|||||||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||
Sbjct 1386 TATAGAGAGACAATACCAAATGGATCTTCAGTTTCAGGGAGTTGCAGGGAAAGGAGACAT 1445
Query 1086 TAAAAAGAGAACATGAGATCTCCTG 1110
|||||||||||||||||||| ||||
Sbjct 1446 TAAAAAGAGAACATGAGATCACCTG 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5