BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944327
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35610.1 | Symbols: | zinc finger (C2H2 type) family protei... 911 0.0
> AT4G35610.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr4:16899410-16900225 REVERSE LENGTH=816
Length=816
Score = 911 bits (493), Expect = 0.0
Identities = 714/817 (87%), Gaps = 29/817 (4%)
Strand=Plus/Plus
Query 30 AACCCAGAGAAAACGAAAGTGGATGATGTTGAGGAGGATGAGAGAGAAGATTCTGATGAG 89
||||||||||||||||||||||||| | |||||| | |||| ||| || |||||||||
Sbjct 13 AACCCAGAGAAAACGAAAGTGGATGTTACTGAGGA--A-GAGAAAGAGGAATCTGATGAG 69
Query 90 CAATGGAACGATGAAGAAACTGATACGAGAGAAATCGTTCTCGGCCTCCCTGCTTTGAGT 149
||||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||| |
Sbjct 70 CAATGGAGCGATGAAGAAACCAATATGAGAGAAATTGTTCTCGGCCTCCCTGCTTTGAAT 129
Query 150 ATCAGCAGTAGAATATTTGTTGATAGCAGTAGTGTCGCTGTCGTTGAAGAAGATGTAGAA 209
||||||||||||||||||| || || |||| || | ||||||||| ||||||| ||||
Sbjct 130 ATCAGCAGTAGAATATTTG--GAGAG-AGTA--GTAG-TGTCGTTGAGGAAGATGCAGAA 183
Query 210 AAAGCGCGTTTGAATGAGCAAGCGGTTCTTGCGGCGGGGTTGGTTTTGGCTGCGGCAGAG 269
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 184 AAAGCGCGTTTGAATGAGCAAGCGGTTCTTGCGGCGGGGTTGATTTTGGCTGCGGCAGAG 243
Query 270 GAAGCGGTTATGAAAGGAGTGAATGAGGGCAGTGGGAGTGGTGGGAAGAAAAAGAGTAGA 329
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 244 GAAGCGGTTATGAAAGGAATGAATGAGGGAAGTGGGAGTGGTGGGAAGAAAAAGAGTAGA 303
Query 330 CCAAGGACATCGACGAAAACCGATGATAAAGCGGATGGTTCGGGT------------AAA 377
||||||| ||| ||| |||||||||| ||| |||||||| |||| |||
Sbjct 304 CCAAGGATATCTACGCAAACCGATGACGAAGGGGATGGTTTGGGTGAAGGAGAAGCGAAA 363
Query 378 AAGCCGAAGAAGAAATCATCGGAATTGACTCATCCACCAAAAGGACCACCGGTTTGTCAT 437
||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct 364 AAGCCGAAGAAGAAAGCAAAGGAATTGACTCATCCACCGAAAGGACCACCGGTTTGTCAT 423
Query 438 ATCTGTGGACGAGGTTTCGGTTCTTGGAAGGCTGTGTTTGGACATATGAGGGCACATAAA 497
||||||||| ||||||||||||| |||||||| |||||||| ||||||||||| |||| |
Sbjct 424 ATCTGTGGAAGAGGTTTCGGTTCGTGGAAGGCAGTGTTTGGGCATATGAGGGCTCATAGA 483
Query 498 GATAGAAACTATCAAGGATTTCTCCCCCCTCCTACATTCTCTGCGGCTGCTGAAAGGTTT 557
||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||||||
Sbjct 484 GATAGAAACTATCAAGGGTTTCTTCCTCCTCCTACATTCTCTGCGGGGGCTGAAAGGTTT 543
Query 558 -TCGATTCCTGGAAGAA-ACTCTGCTTTTGCTATTGTCACTG-CTGGAGGAGGGAGTTCT 614
| |||||| || || | ||||||||| |||||| ||||| | |||||||| ||||||
Sbjct 544 GT-GATTCCCGGGCTAAGA-TCTGCTTTTACTATTGCCACTGTC-GGAGGAGGAAGTTCT 600
Query 615 GGTGGCCTTGCTGG-AGGAGGAGGAAGTTCCGGTGGTTGTCCTGCCAGTGCTGGTGGTGA 673
||||| | || || ||||||| |||||||||||| || | ||| ||||| |||||||||
Sbjct 601 GGTGGTGTAGC-GGTAGGAGGAAGAAGTTCCGGTGATTTTTCTGGCAGTGGTGGTGGTGA 659
Query 674 TGCTTGGGGATGTGAAGGCGGGAAAGGTGCAGCTATTGACTTGAATGTGGATCCTGTGGA 733
||| |||| |||||| |||| |||| ||| |||||| ||||||||||| ||||||||
Sbjct 660 TGCGCCAGGATCTGAAGGTGGGAGAGGTTCAGGTATTGATTTGAATGTGGAACCTGTGGA 719
Query 734 GGAAGTAGAGGAAGCTACTGAATCTGGATTTATTGCCAAGTTTGATCTTAATAAATCGCC 793
| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct 720 GCAAGTAGAGGAAGCGACTGAATCTGGATGTATTGCCAAGTTCGATCTTAATAAATCTCC 779
Query 794 ACCAAAAGATGAAGAGGAAGAGGACAAAGCCAAGTGA 830
|||||||||||||||||||||||||||| ||||||||
Sbjct 780 ACCAAAAGATGAAGAGGAAGAGGACAAACCCAAGTGA 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41443171275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5