BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944335
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related h... 1345 0.0
> AT4G35550.1 | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related
homeobox 13 | chr4:16875521-16877306 REVERSE LENGTH=1239
Length=1239
Score = 1345 bits (728), Expect = 0.0
Identities = 815/856 (95%), Gaps = 10/856 (1%)
Strand=Plus/Plus
Query 1 TCTTCTGAGCGAAATTCTGACAAAAGAGATGATGGAATGGGATAATCAGCAACAGCCCAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 112 TCTTCTGAGCGAAATTCTGACAAAAGAGATGATGGAATGGGATAATCAGCTACAACCCAA 171
Query 61 TAACCATCTCTCTTCTAATCTTCAAGGGATCGATGTTAATGGCGGCTCCGGCGCCGGAGG 120
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 172 TAACCATCACTCTTCTAATCTTCAAGGGATCGACGTTAATGGCGGCTCCGGCGCCGGAGG 231
Query 121 AGGAATGTACGTGAAGGTGATGACCGATGAGCAGTATGAAACTTTGAGGAAACAGATTGC 180
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 232 AGGAATGTACGTGAAGGTGATGACCGATGAGCAGTATGAAACTCTCAGGAAACAGATTGC 291
Query 181 TATTTACGGCACCATTTGTGAGCGTCTTGTTGAGATGCACAAAACTCTCACTGCTCAACA 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 292 TATTTACGGCACCATTTGTGAGCGTCTTGTTGAGATGCATAAAACTCTCACTGCTCAACA 351
Query 241 AGATCTTGCAGGAGGGAGATTGGGAGGTCTATATGCAGACCCAATGATGTCATCTATAGG 300
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct 352 AGATCTTGCAGGAGGGAGAATGGGAGGACTATATGCAGACCCAATGATGTCATCTTTAGG 411
Query 301 TCACAAGATGACAGCTAGACAGAGGTGGACTCCTACGCCAGTCCAGCTTCAGATTCTGGA 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TCATAAGATGACAGCTAGACAGAGGTGGACTCCTACGCCAGTCCAGCTTCAGATTCTGGA 471
Query 361 GCGTATATTCGACCAAGGCACTGGAACACCGAGCAAGCAGAAGATCAAAGAGATAACAGA 420
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 472 ACGTATATTCGATCAAGGCACGGGAACACCGAGCAAGCAGAAGATCAAAGACATAACAGA 531
Query 421 AGAGCTGAGCCAACACGGCGAGATTGCTGAACAAAATGTCTACAACTGGTTCCAGAACCG 480
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 532 AGAGCTGAGCCAACACGGCCAGATTGCTGAACAAAATGTCTATAACTGGTTCCAGAACCG 591
Query 481 ACGTGCTCGATCCAAGAGGAAGCAGCAGGGTGGAGGTTCTTCTGGAAACAATAATGGTGA 540
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 592 ACGTGCTCGATCCAAGAGGAAGCAGCATGGTGGAGGTTCTTCTGGAAATAATAATGGTGA 651
Query 541 GTCTGAGGTAGAGACTGAAGTTGAGGCATTGAATGAGAAGAGAGTA---AGGCCAGAGAG 597
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 652 GTCTGAGGTAGAGACTGAAGTTGAAGCATTGAATGAGAAGAGAGTAGTGAGGCCAGAGAG 711
Query 598 TCTTCTTGGTCTTCCAGATGGAAATAACAACAATAATGTGTTAGGGTCAACAACAACAAC 657
|||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||
Sbjct 712 TCTTCTTGGTCTTCCAGATGGAAATAGCAACAATAATGGGTTAGGGACAACAACAGCAAC 771
Query 658 AACTACT-C-C-TAGGCCTGAAGATCTTTGCTTTCAGAGCCCTGAGATGAGCTCAGACCT 714
||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 772 AACTACTGCTCCTAGGCCTGAAGATCTTTGCTTTCAGAGCCCTGAGATTAGCTCAGACCT 831
Query 715 TCACTTGTTAGGTGTTCTAGCAAACCCAAGGGATGAGCATCTTGTTGGAAAGATGGGACT 774
||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TCACTTGCTAGATGTTCTATCAAACCCAAGGGATGAGCATCTTGTTGGAAAGATGGGACT 891
Query 775 GTCTGAAAGTTACAACATTTATGATCATGTTGAAGATTATGGCATGTCAGGCTGATT-AA 833
| | |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 892 GGCGGAAAGTTACAACCTTTATGATCATGTTGAAGATTATGGCATGTCAGGCTGATTGAA 951
Query 834 TACAACAAGCTGAGGA 849
||||| ||||||||
Sbjct 952 TACAA---GCTGAGGA 964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5