BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944342

Length=511
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35490.1 | Symbols: MRPL11 | mitochondrial ribosomal protein...   837    0.0  


> AT4G35490.1 | Symbols: MRPL11 | mitochondrial ribosomal protein 
L11 | chr4:16855902-16856674 FORWARD LENGTH=773
Length=773

 Score =  837 bits (453),  Expect = 0.0
 Identities = 490/507 (97%), Gaps = 5/507 (1%)
 Strand=Plus/Plus

Query  5    CATCACGATCGCAACAATGGCGGCGGCTGCGAAGGAGATCTTAACACGGCGACCAGTGGC  64
            |||||||||||||||||||||||| ||||||||||||||| |   |||||||||||||||
Sbjct  1    CATCACGATCGCAACAATGGCGGCTGCTGCGAAGGAGATCCT---ACGGCGACCAGTGGC  57

Query  65   GGCAACAATAAGGCTAACCGTTCCGGCAGGAGGAGCAAGGCCAGCACCACCGGTAGGCCC  124
            ||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||
Sbjct  58   GGCAACAATAAGGCTAACCGTTCCGGCGGGAGGAGCGAGGCCAGCCCCACCGGTAGGTCC  117

Query  125  GGCGCTAGGTCAGTACAGGCTTAACCTGATGGCTTTCTGCAAAGACTTCAACGCTCGGAC  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  118  GGCGCTAGGTCAGTACAGGCTTAACCTGATGGCTTTCTGCAAAGACTTCAACGCTAGGAC  177

Query  185  TCAAAAGTACAAACCAGACACTCCGATGGCCGTGACGATAACGGCGTTCAAGGACAACTC  244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  178  TCAAAAGTACAAACCAGACACTCCGATGGCCGTGACGATAACGGCGTTCAAGGACAACTC  237

Query  245  TTTCGAATTCACCGTCAAGTCTCCGACGGTGTCGTGGTACATCAAGAAAGCAGCTGGAGT  304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  TTTCGAATTCACCGTCAAGTCTCCGACGGTGTCGTGGTACATCAAGAAAGCAGCTGGAGT  297

Query  305  CGATAAAGGAAGCACACGACCGGGTCATTTGACGGTGACGACGCTATCGGTGAGACACGT  364
            |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct  298  CGATAAAGGAAGCACACGCCCGGGTCATTTGTCGGTGACGACGCTATCGGTGAGACACGT  357

Query  365  GTACGAGATCGCGAAGGTGAAGCAGACGGATCCGTTTTGTCAGTATATGCCATTGGAATC  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  358  GTACGAGATCGCGAAGGTGAAGCAGACGGATCCGTTTTGTCAGTATATGCCGTTGGAATC  417

Query  425  GATTTGCAAATCTATCATTGGTACTGCTAATTCTATGGGTATCAAGATCGTTAAGGATTT  484
            |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  418  GATTTGCAAATCCATCATTGGTACTGCTAATTCTATGGGTATCAAGATCGTTCAGGATTT  477

Query  485  GGAGTGATGATTTAGGGTTTCTGATGA  511
            ||||||||  |||||||||||||||||
Sbjct  478  GGAGTGAT--TTTAGGGTTTCTGATGA  502



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24413795442


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5