BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944345
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35460.1 | Symbols: ATNTRB, NTRB, NTR1 | NADPH-dependent thi... 1881 0.0
AT2G17420.1 | Symbols: NTRA, ATNTRA, NTR2 | NADPH-dependent thi... 933 0.0
> AT4G35460.1 | Symbols: ATNTRB, NTRB, NTR1 | NADPH-dependent thioredoxin
reductase B | chr4:16842188-16844082 FORWARD LENGTH=1500
Length=1500
Score = 1881 bits (1018), Expect = 0.0
Identities = 1119/1168 (96%), Gaps = 6/1168 (1%)
Strand=Plus/Plus
Query 7 AAGTAAATTCGCTCCCAATGAATTGTATGACTCGTTTAAAGTGTTTGATAAGCAAAGCAC 66
||||||||||| ||| |||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 14 AAGTAAATTCGTTCCTAATGAACTGTGTGAGTCGTTTAAAGTGTTTGATAAGCAAAGCAC 73
Query 67 GAAGCTTTGCACGGCTTGGTGGTGAGTCCACTCTCTCTCAACCGCCGTCTCTCGCCTCCG 126
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 74 GAAGCTTTGCACGGCTTGGTGGTGAATCCACTCTCTCTCAACCGCCGTCTCTCGCCTCCG 133
Query 127 CCACGGTTTCTTCATCCGCCGTCATGAATGGCCTCGAAACTCATAACACAAGGCTCTGTA 186
|| || ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 134 CCGCGTTTTCTTCATCCGCCGTCATGAATGGTCTCGAAACTCACAACACAAGGCTCTGTA 193
Query 187 TCGTAGGTAGTGGCCCAGCGGCACACACGGCGGCGATTTACGCAGCTAGGGCTGAACTTA 246
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 TCGTAGGAAGTGGCCCAGCGGCACACACGGCGGCGATTTACGCAGCTAGGGCTGAACTTA 253
Query 247 AGCCTCTTCTATTCGAAGGATGGATGGCTAACAACATCGCTCCCGGCGGTCAACTAACAA 306
| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 254 AACCTCTTCTCTTCGAAGGATGGATGGCTAACGACATCGCTCCCGGTGGTCAACTAACAA 313
Query 307 CCACCACCGACGTCGAGAACTTT-CCCGGATTTCCGGAAGGTATTCTCGGAGCAGAGCTC 365
||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||
Sbjct 314 CCACCACCGACGTCGAGAA-TTTCCCCGGATTTCCAGAAGGTATTCTCGGAGTAGAGCTC 372
Query 366 ACTGACAAATTCCGTAAACAATCAGAGCGATTCGGTACTACGATCTTCACAGAGACGGTG 425
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 373 ACTGACAAATTCCGTAAACAATCGGAGCGATTCGGTACTACGATATTTACAGAGACGGTG 432
Query 426 ACGAAAGTTGATTTCTCTTCGAAACCGTTTAAGCTATTCACAGATTCAAGAA-CCGTTCT 484
|||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 433 ACGAAAGTCGATTTCTCTTCGAAACCGTTTAAGCTATTCACAGATTCAA-AAGCCATTCT 491
Query 485 CGCTGACGCTGTTATTCTCGCTACTGGAGCTGTGGCTAAGCGGCTTAACTTCGTTGGCTC 544
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 492 CGCTGACGCTGTGATTCTCGCTACTGGAGCTGTGGCTAAGCGGCTTAGCTTCGTTGGATC 551
Query 545 TGGTGAAGGTTCCGGAGGTTTCTGGAACCGTGGAATCTCCGCTTGTGCTGTTTGCGACGG 604
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 TGGTGAAGCTTCTGGAGGTTTCTGGAACCGTGGAATCTCCGCTTGTGCTGTTTGCGACGG 611
Query 605 AGCTGCTCCGATTTTCCGTAACAAACCTCTTGCGGTTATCGGTGGAGGCGATTCAGCAAT 664
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 612 AGCTGCTCCGATATTCCGTAACAAACCTCTTGCGGTGATCGGTGGAGGCGATTCAGCAAT 671
Query 665 GGAAGAAGCAAACTTTCTCACCAAATATGGATCAAAAGTGTATATAATCCATAGGAGAGA 724
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 672 GGAAGAAGCAAACTTTCTTACAAAATATGGATCTAAAGTGTATATAATCCATAGGAGAGA 731
Query 725 TGCTTTTAGAGCGTCTAAGATTATGCAGCAGCGGGCTTTGTCTAATCCTAAGATTGATGT 784
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 732 TGCTTTTAGAGCGTCTAAGATTATGCAGCAGCGAGCTTTGTCTAATCCTAAGATTGATGT 791
Query 785 GATTTGGAACTCTTCGGTTGTGGAAGCTTATGGAGATGGAGAAAGAGATGTGCTTGGAGG 844
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 GATTTGGAACTCGTCTGTTGTGGAAGCTTATGGAGATGGAGAAAGAGATGTGCTTGGAGG 851
Query 845 ATTGAAAGTGAAGAATGTGGTTACTGGACATGTTTCTGATTTGAAAGTTTCTGGATTGTT 904
|||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 852 ATTGAAAGTGAAGAATGTGGTTACCGGAGATGTTTCTGATTTAAAAGTTTCTGGATTGTT 911
Query 905 CTTTGCTATTGGTCATGAGCCAGCTACCAAGTTTTTAGATGGTGGTGTTGAGTTAGATTC 964
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 912 CTTTGCTATTGGTCATGAGCCAGCTACCAAGTTTTTGGATGGTGGTGTTGAGTTAGATTC 971
Query 965 GGATGGTTATGTTGTGACCAAGCCTGGTACTACACAGACTAGCGTTCCCGGAGTTTTCGC 1024
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GGATGGTTATGTTGTCACGAAGCCTGGTACTACACAGACTAGCGTTCCCGGAGTTTTCGC 1031
Query 1025 TGCGGGTGATGTTCAGGATAAGAAGTATAGGCAAGC-AGTCACTGCTGCAGGAACTGGGT 1083
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1032 TGCGGGTGATGTTCAGGATAAGAAGTATAGGCAAGCCA-TCACTGCTGCAGGAACTGGGT 1090
Query 1084 GCATGGCAGCTCTGGATGCAGAGCATTACTTACAGGAGATTGGATCTCAGCAAGGTAAGA 1143
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1091 GCATGGCAGCTTTGGATGCAGAGCATTACTTACAAGAGATTGGATCTCAGCAAGGTAAGA 1150
Query 1144 GTGATTGAGGAAATTGTTGGAAGGCTCA 1171
||||||||||||||||||||||||||||
Sbjct 1151 GTGATTGAGGAAATTGTTGGAAGGCTCA 1178
> AT2G17420.1 | Symbols: NTRA, ATNTRA, NTR2 | NADPH-dependent thioredoxin
reductase A | chr2:7564345-7566539 FORWARD LENGTH=1469
Length=1469
Score = 933 bits (505), Expect = 0.0
Identities = 845/1008 (84%), Gaps = 28/1008 (3%)
Strand=Plus/Plus
Query 162 GAAACTCATAACA-CAAGGCTCTGTATCGTAGGTAGTGGCCCAGCGGCACACACGGCGGC 220
|||||||| || | ||||| | || ||||| || ||||| ||||| ||||||||||||||
Sbjct 160 GAAACTCACAAAACCAAGG-TTTGCATCGTCGGAAGTGGACCAGCAGCACACACGGCGGC 218
Query 221 GATTTACGCAGCTAGGGCTGAACTTAAGCCTCTTCTATTCGAAGGATGGATGGCTAACAA 280
||| || ||| | || || || |||||||||||||| ||||||||||||||||||||| |
Sbjct 219 GATCTATGCATCGAGAGCGGAGCTTAAGCCTCTTCTCTTCGAAGGATGGATGGCTAACGA 278
Query 281 CATCGCTCCCGGCGGTCAACTAACAACCACCACCGACGTCGAGAACTTTCCC-GGATTTC 339
||||||||||||||||||| |||| || || ||||||||||| ||| ||||| || || |
Sbjct 279 CATCGCTCCCGGCGGTCAATTAACTACAACAACCGACGTCGAAAAC-TTCCCTGGGTTCC 337
Query 340 CGGAAGGTATTCTCGG-AGCAGAGCTCACTGACAAATTCCGTAAACAATCAGAGCGATTC 398
| |||||||||||||| | || || ||| |||||| | |||||||| ||| ||||
Sbjct 338 CTGAAGGTATTCTCGGTA-TTGATATCGTTGAGAAATTCAGAAAACAATCGGAGAGATTT 396
Query 399 GGTACTACGATCTTCACAGAGAC-GGTGACGAAAGTTGATTTCTCTTCGAAACCGTTTAA 457
|| |||||||||||||| || || | | || |||||||||||||| ||||||||||||||
Sbjct 397 GGAACTACGATCTTCACGGAAACTGTTAAC-AAAGTTGATTTCTCATCGAAACCGTTTAA 455
Query 458 GCTATTCACAGATTCAAGAACCGTTCTCGCTGACGCTGTTATTC-TCGCTACTGGAGCTG 516
||||||||| ||||| ||||| ||||||||||| ||| || || | ||||||||||||
Sbjct 456 GCTATTCACTGATTCGAGAACTGTTCTCGCTGATTCTG-TAATCATTTCTACTGGAGCTG 514
Query 517 TGGCTAAGCGGCTTAACTTCGTTGGCTCTGGTGAAGGTTCCGGAGGTTTCTGGAACCGTG 576
| ||||| || |||| |||| ||| |||||||||||| || ||||| ||||| ||||
Sbjct 515 TTGCTAAACGTCTTAGCTTCACTGGATCTGGTGAAGGTAATGGTGGTTTTTGGAATCGTG 574
Query 577 GAATCTCCGCTTGTGCTGTTTGCGACGGAGCTGCTCCGATTTTCCGTAACAAACCTCTTG 636
| ||||||||||||||||||||||||||||||||||||||||| | || || |||||||
Sbjct 575 GTATCTCCGCTTGTGCTGTTTGCGACGGAGCTGCTCCGATTTTTAGGAATAAGCCTCTTG 634
Query 637 CGGTTATCGGTGGAGGCGATTCAGCAATGGAAGAAGCAAACTTTCTCACCAAATATGGAT 696
|||||| ||||| || |||||||| ||||| ||||| || ||||| || || |||||||
Sbjct 635 TGGTTATTGGTGGTGGTGATTCAGCTATGGAGGAAGCGAATTTTCTGACTAAGTATGGAT 694
Query 697 CAAAAGTGTATATAATCCATAGGAGAGATGCTTTTAGAGCGTCTAAGATTATGCAGCAGC 756
| || || ||||| || |||||||| ||| | ||||| |||||||||||||||||||||
Sbjct 695 CTAAGGTTTATATTATTCATAGGAGGGATACGTTTAGGGCGTCTAAGATTATGCAGCAGA 754
Query 757 GGGCTTTGTCTAATCCTAAGATTGATGTGATTTGGAACTCTTCGGTTGTGGAAGCTTATG 816
| ||||||||||| ||||||||||| ||||||||||||||| | || || || || ||||
Sbjct 755 GAGCTTTGTCTAACCCTAAGATTGAAGTGATTTGGAACTCTGCCGTGGTTGAGGCGTATG 814
Query 817 GAGATGGAGAAA-GAGATGTG--CTTGGAGGATTGAAAGTGAAGAATGTGGTTACTGGAC 873
| |||| | ||| | || ||| |||||||||||||| ||||||||||| ||||||||
Sbjct 815 GTGATG-A-AAATG-GACGTGTTCTTGGAGGATTGAAGGTGAAGAATGTTGTTACTGGGG 871
Query 874 ATGTTTCTGATTTGAAAGTTTCTGGATTGTTCTTTGCTATTGGTCATGAGCCAGCTACCA 933
||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 872 ATGTTTCAGATCTGAAGGTGTCTGGATTGTTCTTTGCTATTGGTCATGAGCCAGCTACGA 931
Query 934 AGTTTTTAGATGGTGGTG-TTGAG-TTAGATTCGGATGGTTATGTTGTGACCAAGCCTGG 991
||||||| ||||| | | ||||| || ||| ||||||||||||||||||||||| ||
Sbjct 932 AGTTTTTGGATGG-GCAGCTTGAGCTT-GATGAAGATGGTTATGTTGTGACCAAGCCAGG 989
Query 992 TACTAC-ACAGACTAGCGTTCCCGGAGT-TTTCGCTGCGGGTGATGTTCAGGATAAGAAG 1049
|||||| | |||| ||||| || || ||| ||||| || |||||||| || ||||||
Sbjct 990 TACTACTA-AGACGAGCGTGGTTGGTGTATTT-GCTGCTGGAGATGTTCAAGACAAGAAG 1047
Query 1050 TATAGGCAAGC-AGTCACTGCTGCAGGAACTGGGTGCATGGCAGC-TCTGGATGCAGAGC 1107
||||| || || | |||||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1048 TATAGACAGGCCA-TCACTGCTGCAGGAACTGGGTGCATGGCGGCAT-TGGATGCAGAGC 1105
Query 1108 ATTACTTACAGGAGATTGGATCTCAGCAAGGTAAGAGTGATTGAGGAA 1155
|||||||||| ||||||||||||||| | ||||||||||||||| |||
Sbjct 1106 ATTACTTACAAGAGATTGGATCTCAGGAGGGTAAGAGTGATTGAAGAA 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5