BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944354
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35370.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1088 0.0
> AT4G35370.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:16815138-16817544 FORWARD LENGTH=1342
Length=1342
Score = 1088 bits (589), Expect = 0.0
Identities = 772/857 (90%), Gaps = 25/857 (3%)
Strand=Plus/Plus
Query 339 GAGATTGAACTGTTTAGCTCTGGCCAGGGAGACCTTTATTATCCAAGCAATGAGATGGAT 398
||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 247 GAGATTGAACTGTTTAGCTCTGGGCAGGGACACCTTTATTATCCAAGCAATGACATGGAT 306
Query 399 CCATACCTAAAGGATACTGACGCTGACTATGACTCAGAGGATCTCGATGACATGATAATT 458
|||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||
Sbjct 307 CCATACCTAAAGGATACTGACGGTGACTATGACTCAGAGGATCACGATGACTTGACAATT 366
Query 459 AGGCCAACCGATTTACTGATCATCTGTGCTAG-TATTAAACGTGAAGTCAACTCTCTCGA 517
||||||||||||| |||||||||||||||| | |||||||| ||||||||||| ||||||
Sbjct 367 AGGCCAACCGATTCACTGATCATCTGTGCT-GCTATTAAACATGAAGTCAACTATCTCGA 425
Query 518 GGTTTATGTATACGAGGAATCCGGGAACATGTATCTTCGTC-ATGACATGATTATATCCA 576
|||||||||||| |||||||||| ||||| |||||||| | |||||||||||||||||
Sbjct 426 GGTTTATGTATATGAGGAATCCGAAAACATTTATCTTCG-CAATGACATGATTATATCCG 484
Query 577 AGGTTCCATTGTGCACAGCATGGCTTGATTGTCCTCTCAAAGGAGGGGAAAAAGGGAACT 636
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 485 AGCTTCCATTGTGCACAGCATGGCTTGATTGTCCTCTCAAAGGAGGGGGAAAAGGGAACT 544
Query 637 TTGTAGCTATCGGGTCAATGGACTCCTCCAAAGAGATATGGGATCTTGACCTTGTGAATG 696
|||||||||||||| ||||||| ||||| | |||||||||||||||||||||||| |||
Sbjct 545 TTGTAGCTATCGGGACAATGGAGTCCTCTATAGAGATATGGGATCTTGACCTTGT--ATG 602
Query 697 -A--GGTGCTACCTTGTGTACAACTGGGACGAATAGCCGGACAGACATCAGATTGCCACA 753
| |||||||||||||||||||| || | | | | | || | ||| |||||
Sbjct 603 TACTTGTGCTACCTTGTGTACAACT-GG--G---A--C-G---G--AT-A-ATTCCCACA 646
Query 754 CTGATCCAGTAATTGATCTTGCTTGGAACAAGGAGTTTCGGAATATAGTTGCTAGTGCCA 813
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 647 CTGGTCCAGTAATTGATCTTGCTTGGAACAAGGAGTTTCGGAATATAGTTGCTAGTGGTA 706
Query 814 GTGCCGACAAAAAAGTTAAGGTTTGGGATGTCGCTACGGGGAAATGCAAGGTCACTATGG 873
||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 707 GTGAAGACAAAAAAGTGAAGGTTTGGGATGTGGCTACGGGGAAATGCAAGGTTACTATGG 766
Query 874 AGCATCACGAAGGGAAGGTTAAAGCGGTTGCATGGAACCATTATGCTCCAGAAGTACTCC 933
||||||||||| ||||||| | ||||||||||||||| ||||| |||||||||||||||
Sbjct 767 AGCATCACGAAAAGAAGGTTCACGCGGTTGCATGGAACAATTATACTCCAGAAGTACTCC 826
Query 934 TCAGTGGGTCTAGTGATGGCACTGTAGTAATGAAAGACGGAAGGGACCCTTCACACTCGG 993
||||||||||| ||||| | ||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 827 TCAGTGGGTCTCGTGATCGTACTGTAGTATTGAAAGATGGAAGGGACCCTTCAAACTCGG 886
Query 994 GTTTGAAATGGTCTACCAAGGCGGAAGTTGAAGACTTGGCCTGGGATCCTCACAGCGAAC 1053
||||||||||||||||| |||| |||| ||| | ||||| |||||||||||||||||||
Sbjct 887 GTTTGAAATGGTCTACCGAGGCCAAAGTCGAAAAATTGGCTTGGGATCCTCACAGCGAAC 946
Query 1054 ACTCCTTTGTGGCGAGTCTCGAAGATGGAACTGTGAAGGGATTTGATGTACGTGCTTCTG 1113
|||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||
Sbjct 947 ACTCCTTTGTGGTGAGTCTCAAAGATGGAACTGTGAAGGGCTTTGATACACGTGCTTCTG 1006
Query 1114 ATTTATCACCAAATTTCATTCTCCATGCTCATTATGGTGAAGTCTCCTCCATATCATACA 1173
|||||||||||| ||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 1007 ATTTATCACCAAGTTTCATTATCCATGCTCATGATAGTGAAGTCTCCTCCATATCATACA 1066
Query 1174 ACATACAGGCCCCCAAT 1190
||||||| |||||||||
Sbjct 1067 ACATACATGCCCCCAAT 1083
Score = 159 bits (86), Expect = 6e-38
Identities = 150/177 (85%), Gaps = 20/177 (11%)
Strand=Plus/Plus
Query 139 GGAAGAAGAGATGGACGATGAAA--CA-CA-G----AGTTGCCCATGCCAAGTCTGTAGC 190
||||||| ||||||||||||||| || | | |||| | |||||||||||||||||
Sbjct 78 GGAAGAAAAGATGGACGATGAAATTCAGAATGCTCAAGTTACTCATGCCAAGTCTGTAGC 137
Query 191 AAAATCTTTTGGGAAACCATGTTCCAAAAGCAAGGGTGCTTCTTCTTCTTCAACAGATGC 250
|||||||||| || | |||||||||| ||||||||||||||||||||||||
Sbjct 138 AAAATCTTTT-GG-------G----AAAAGCAAGGTTGCTTCTTCTTCTTCAACAGATGC 185
Query 251 TGATGACGTTGTCAAGTTCTTGAAAGAACTCGACATGGATAACTATGACGAAGAGGA 307
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 186 TGATGAAGTTGTCAAGTTCTTGAAAGAACTCGACATGGATAACTATGATGAAGAGGA 242
Score = 147 bits (79), Expect = 4e-34
Identities = 90/95 (95%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 1284 CTTTTGGCTACGGGATCTAG-GGATGAAAGTGTGAAACTTTGGGATCTTTCAAACAATCA 1342
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 1084 CTTTTGGCTACGGGATCT-GCGGATGAAAGTGTGAAACTTTGGGATCTTTCAAACAACCA 1142
Query 1343 ACCTTCATGGATTGCTACAAACATGCCAAATGCTG 1377
||| ||||||||||||||||||| |||||||||||
Sbjct 1143 ACCATCATGGATTGCTACAAACAAGCCAAATGCTG 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79015657830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5