BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944364
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35280.1 | Symbols: | C2H2-like zinc finger protein | chr4:... 1277 0.0
> AT4G35280.1 | Symbols: | C2H2-like zinc finger protein | chr4:16787429-16788283
REVERSE LENGTH=855
Length=855
Score = 1277 bits (691), Expect = 0.0
Identities = 804/858 (94%), Gaps = 9/858 (1%)
Strand=Plus/Plus
Query 23 ATGAACAACAATCATTCCTTTTATGATCGCAATTTTCACATTCCACTTCATCCTTCTAAC 82
||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGAACAACAATCATTCCTATGATGATCGCAGTTTTCACATTCCACTTCATCCTTCTAAC 60
Query 83 GCAAGCAACCCTAATCCAAATCTCCAGTTTGCTTTATCTTCAAGCTACGAACACAGTCCT 142
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 ACAAGCAACCCTAATCCAAATCTCCAGTTTGCTTTATCTTCAAGCTACGATCACAGTCCT 120
Query 143 AAGAAGAAACGCACCAAAACCGTTGCTTCATCTTCTAGTTCTTCACCAAAGTCCGCATCA 202
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 121 AAGAAGAAACGCACCAAAACCGTTGCTTCATCCTCTAGTTCTTCACCAAAATCCGCGTCA 180
Query 203 AAACCCAAATACACCAGAAAACCAGATCCAAATGCCCCCAAAATCACTCGTCCATGTACT 262
||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 181 AAACCAAAATACACCAAAAAACCAGACCCAAATGCCCCCAAAATCACACGTCCATGTACT 240
Query 263 GAATGTGGCAGACAGTTTTGGTCTTGGAAAGCTCTCTTTGGTCACATGAGATGTCACCCT 322
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GAATGTGGCAGAAAGTTTTGGTCTTGGAAGGCTCTCTTTGGTCACATGAGATGTCACCCT 300
Query 323 GAGCGTCAATGGCGTGGCATTAATCCTCCTCCTAACTACCGTGC-CTCCACTACGGCTTC 381
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 301 GAGCGTCAATGGCGTGGCATTAATCCTCCTCCTAACTACCGTGTGC-CCACCGCGGCTTC 359
Query 382 ATCAAGACAACTAAACCAGAGATCACCAAATTGGGTCTCATTTATGTCTGAGGAAGACCA 441
|||| ||| ||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 360 TTCAAAACAGTTAAACCAGATATTACCAAATTGGGTCTCATTTATGTCCGAGGAAGACCA 419
Query 442 TGAAGTCGCTTCTTGTCTCTTACTGTTGTCTAATGGCACACCATCATCATCGAGTAGTGA 501
|||||||||||||||||||||| || |||||||||| ||||||||||||||||||| |||
Sbjct 420 TGAAGTCGCTTCTTGTCTCTTAATGCTGTCTAATGGTACACCATCATCATCGAGTATTGA 479
Query 502 ACGGTTTGAGTGTGGAGGATGTAAGAAAGTGTTTGGATCACATCAGGCTTTAGGAGGACA 561
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACGGTTCGAGTGTGGAGGATGTAAGAAAGTGTTTGGATCACATCAGGCTTTAGGAGGACA 539
Query 562 CAGAGCGAGTCACAAGAACGTTAAAGGATGTTTCGCTATCACAAACGTAACCGATGATCC 621
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 CAGAGCGAGTCATAAAAACGTTAAAGGCTGTTTCGCTATCACAAACGTAACCGATGATCC 599
Query 622 TATGACGGTTACTACTTCTAGTGATCAAGATCA-CAAGGCAAAAATCCTTACGTTTTCGG 680
|||||||||| |||||||||||| || ||||| || || |||||||||||||||||| |
Sbjct 600 TATGACGGTTTCTACTTCTAGTGGGCATGATCATCAGGG-AAAAATCCTTACGTTTTCAG 658
Query 681 GGCATCATAAGTGTAATATCTGTTTTAGGGTGTTCCCGAGTGGTCAAGCTTTAGGAGGTC 740
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 659 GGCATCATAAGTGTAATATCTGTTTTAGAGTGTTCTCGAGTGGTCAAGCTTTAGGAGGTC 718
Query 741 ACATGAGATGTCACTGGGAAAGAGAAG-AGGAGACGATGATCAGTGGTGCTTTGGATTTG 799
||||||||||||| ||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 719 ACATGAGATGTCATTGGGAAA-AGGAGGAGGAGCCGATGATCAGTGGTGCTTTGGATTTG 777
Query 800 AATGTTCCTGCAA---TACAGGATCTTTCTACTTCGGACACATCAGGGTGTTGTTTAGAT 856
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AATGTTCCTCCAACAATACAGGATCTTTCTACTTCGGACACATCAGGGTGTTGTTTAGAT 837
Query 857 CTTAGGTTAGGACTTTAA 874
|||||||||||||| |||
Sbjct 838 CTTAGGTTAGGACTCTAA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5