BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944366
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35260.1 | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 1... 2025 0.0
AT2G17130.1 | Symbols: IDH2, IDH-II | isocitrate dehydrogenase ... 1029 0.0
> AT4G35260.1 | Symbols: IDH1, IDH-I | isocitrate dehydrogenase
1 | chr4:16774195-16776325 REVERSE LENGTH=1495
Length=1495
Score = 2025 bits (1096), Expect = 0.0
Identities = 1205/1255 (96%), Gaps = 17/1255 (1%)
Strand=Plus/Plus
Query 2 CCCAAAATTGCAGAGCAAAAATGTCTCGCAGATCGCTAACTCTCCTCAAGAATCTAGCTA 61
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 CCCAAAATTGAAGA-CAAAAATGTCTCGCAGATCGCTAACTCTCCTCAAGAATCTAGCTA 132
Query 62 GAAACGCGAACGGATCAGGTTTTCAAACCCGATCCGTGACTTACATGCCTAGACCCGGTG 121
|||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 133 GAAACGCGAATGGATCAGGTATTCAAACCCGATCCGTGACTTACATGCCCAGACCCGGTG 192
Query 122 ACGGAGCACCACGCGCAGTGACGCTGATTCCAGGAGATGGAATCGGACCTCTGGTAACGA 181
|||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 193 ACGGAGCACCACGCGCAGTGACGCTGATCCCCGGAGATGGAATCGGTCCTCTGGTGACGA 252
Query 182 ACGCCGTGGAACAGGTGATGGAAGCGATGCACGCGCCGATCTTCTTCGAGAAGTACGATG 241
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 253 ACGCCGTGGAACAGGTGATGGAAGCGATGCACGCTCCGATCTTCTTCGAGAAGTACGATG 312
Query 242 TTCACGGAGAAATGAGCCGTGTGCCGGCGGAAGTGATGGAGTCGATAAGGAAGAATAAGG 301
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 313 TTCACGGAGAAATGAGCCGTGTGCCGCCGGAAGTGATGGAGTCGATAAGGAAGAATAAGG 372
Query 302 TTTGTTTGAAAGGTGGGCTTAAGACTCCTGTTGGTGGTGGTGTTAGTTCGCTTAACGTCC 361
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 373 TTTGTTTGAAAGGTGGGCTTAAGACTCCTGTTGGTGGTGGTGTTAGTTCTCTTAACGTCC 432
Query 362 AGCTTAGGAAAGAGCTTGACCTCTTTGCGTCTCTGGTCAACTGTTTTAATTTGCCTGGTT 421
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 433 AGCTTAGGAAAGAGCTTGACCTCTTTGCTTCTCTGGTCAACTGTTTTAATTTGCCTGGTT 492
Query 422 TACCTACTCGCCATGAAAATGTTGACATCGTTGTCATCAGAGAGAACACTGAAGGTGAGT 481
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TACCTACTCGCCATGAGAATGTTGACATCGTTGTCATCAGAGAGAACACTGAAGGTGAGT 552
Query 482 ATGCGGGGCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAGGTGATCACGA 541
| |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 553 ACGCGGGGCTTGAGCACGAGGTTGTTCCTGGTGTCGTTGAGAGTCTGAAGGTGATCACGA 612
Query 542 AGTTCTGTTCCGAGCGTATTGCCAAGTATGCTTTTGAGTATGCCTACCTGAACAACAGGA 601
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 613 AGTTCTGTTCGGAGCGTATTGCAAAGTATGCTTTTGAGTATGCCTACCTGAACAACAGGA 672
Query 602 AGAAAGTTACAGCGGTGCATAAGGCTAACATCATGAAACTTGCGGACGGTTTGTTCTTGG 661
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 673 AGAAAGTTACAGCGGTGCATAAGGCTAACATCATGAAACTTGCGGATGGTTTGTTCTTGG 732
Query 662 AATCTTGTCGGGAGGTTGCTAAAAAGTATCCGAGCATCACCTACAATGAAATCATTGTTG 721
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 733 AATCTTGTCGCGAGGTTGCGAAAAAGTATCCCAGCATCACCTACAATGAAATCATTGTTG 792
Query 722 ATAACTGCTGTATGCAACTTGTAGCGAAACCAGAGCAATTCGATGTCATGGTAACGCCCA 781
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 793 ATAACTGCTGTATGCAACTTGTAGCCAAACCAGAGCAATTCGATGTCATGGTAACGCCGA 852
Query 782 ATCTCTATGGGAATTTAGTTGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ATCTCTATGGGAATTTAGTTGCAAACACTGCTGCTGGTATTGCTGGAGGCACAGGAGTCA 912
Query 842 TGCCTGGAGGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TGCCTGGAGGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGCATCAGCAGGAA 972
Query 902 ATGTTGGGAAAGATAAGATAGTATTGGAAAACAAAGCAAACCCAGTGGCATTGCTTCTCT 961
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 ATGTTGGGAAAGACAAGATAGTATTGGAAAACAAAGCAAACCCAGTGGCATTGCTTCTCT 1032
Query 962 CATCAGCGATGATGCTAAGACACCTTCAGTTTCCTTCATTTGCTGACCGGCTTGAAACAG 1021
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1033 CATCAGCGATGATGCTTAGACACCTTCAGTTTCCTTCATTTGCTGACCGGCTCGAAACAG 1092
Query 1022 CAGTGAAGAAAGTCATCGCTGAAGGAAAGTGCCGGACGAAAGATCTTGGTGGCACAAGCA 1081
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1093 CAGTGAAGAAAGTCATCGCTGAAGGAAAGTGCCGGACGAAAGATCTTGGTGGAACAAGCA 1152
Query 1082 CGACTCAAGAGGTCGTTGATGCGGTCATTGCAAAATTAGACTGACTTTGACAAATTACGT 1141
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1153 CGACTCAAGAGGTCGTTGATGCGGTCATTGCAAAACTAGACTGACTTTGACAAATTACGT 1212
Query 1142 GTTC--GTTC--C------C-TC---T-C-TGCTACAGATTTTGTGTTGCCAAAATATGG 1185
|||| | || | | || | | || |||||||||||||||||||||||||||
Sbjct 1213 GTTCCCGCTCTGCATAAATCATCAAATTCCTGATACAGATTTTGTGTTGCCAAAATATGG 1272
Query 1186 GGTATGATCCAAGCCCAACGGTTATCTGGTTTTGTACCTCGAGTTTTATTATATT 1240
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 GGTATGATCCAAGCACAACGGTTATCTGGTTTTGTACCTCGAGTTTTATTATATT 1327
> AT2G17130.1 | Symbols: IDH2, IDH-II | isocitrate dehydrogenase
subunit 2 | chr2:7460814-7462554 REVERSE LENGTH=1440
Length=1440
Score = 1029 bits (557), Expect = 0.0
Identities = 957/1148 (83%), Gaps = 36/1148 (3%)
Strand=Plus/Plus
Query 4 CAAAATTGCAG-AGCAAAAATGTCTCG-CAGATCGCTAACTCTCCTCAAGAATC-TAGCT 60
||||||||||| || || |||||||| || |||| | |||| || ||||||| | | |
Sbjct 72 CAAAATTGCAGAAG--AAGATGTCTCGCCA-ATCGTTTTCTCTACTGAAGAATCTTCG-T 127
Query 61 AGAAACGCGAACGGAT-CAGGTTTTCAAACCCGATCCGTGACTTACATGCCTAGACCCGG 119
|| | ||| ||| | || | || ||||||||||||||||||||||| ||||||||
Sbjct 128 AGCATCGCTTCCGGTTCCA-AAATCCAGACCCGATCCGTGACTTACATGCCCAGACCCGG 186
Query 120 TGACGGAGCACCACG-CGCAGTGACGCTGATTCCAGGAGATGGAATCGGACC-TCTGGTA 177
||||||| |||| | | |||||||| | || || ||||| ||| | || || | |||||
Sbjct 187 TGACGGAAAACCAAGAC-CAGTGACGTTAATCCCCGGAGACGGAGTTGGTCCGT-TGGTA 244
Query 178 ACGAACGCCGTGGAACAGGTGATGGAAGCGATGCACGCGCCGATCTT-CTTCGAGA-AGT 235
|| ||||| || |||| |||||||||||||||||||| ||| | || |||||| | ||
Sbjct 245 ACAAACGCGGTTCAACAAGTGATGGAAGCGATGCACGCTCCGGT-TTACTTCGA-ACCGT 302
Query 236 ACGATGTTCACGGAGAAATG-AGCCGTGTGCC-GGCGGAAGTGATGGAGTCGA-TAAGGA 292
||| ||||| ||||| ||| || || | || | || | || |||| |||| ||| ||
Sbjct 303 TCGAAGTTCATGGAGATATGAAG-AGTTTACCTGAAGG-ATTGTTGGAATCGATTAA-GA 359
Query 293 AGAATAAGGTTTGTTTGAAAGGTGGGCTTAAGACTCCTGTTGGTGGTGGTGTTAGTTCGC 352
|||| || ||||||||||||||||| ||||||||||| || ||||||||||| || || |
Sbjct 360 AGAACAAAGTTTGTTTGAAAGGTGGTCTTAAGACTCCCGTCGGTGGTGGTGTGAGCTCTC 419
Query 353 TTAACGTCCAGCTTAGGAAA-GAGCTTGACCTCTTTGCGTCTCTGGTCAACTGTTTTAAT 411
| || || | || | |||| |||||||| |||||||| ||| ||||||||||||| |||
Sbjct 420 TCAATGTTAATCTGA-GAAAGGAGCTTGATCTCTTTGCTTCTTTGGTCAACTGTTTCAAT 478
Query 412 TTGCCTGGTTTACCTACTCGCCATGAAAATGTTGACATCGTTGTCATCAGAGAGAACACT 471
|||||||||||| || |||| ||||| |||||||| || ||||| || ||||||||||||
Sbjct 479 TTGCCTGGTTTAGCTTCTCGTCATGAGAATGTTGATATTGTTGTGATTAGAGAGAACACT 538
Query 472 GAAGGTGAGTATGCGGGGCTTGAGCATGAGGTTGTTCCTGGTGTCGTTGAGAGCCTTAAG 531
|||||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 539 GAAGGTGAATATGCAGGTCTTGAACATGAAGTTGTTCCTGGTGTTGTTGAGAGCCTTAAG 598
Query 532 GTGATCACGAAGTTCTGTTCCGAGCGTATTGCCAAGTATGCTTTTGAGTATGCCTACCTG 591
||||| || ||||||||||| ||||||||||| |||||||| ||||||||||||||| ||
Sbjct 599 GTGATTACAAAGTTCTGTTCAGAGCGTATTGCAAAGTATGCGTTTGAGTATGCCTACTTG 658
Query 592 AACAACAGGAAGAAAGTTACAGCGGTGCATAAGGCTAACATCATGAAACTT-GCGGACGG 650
||||||||||||||||||||||| ||||| |||||||| ||||||||| || || || ||
Sbjct 659 AACAACAGGAAGAAAGTTACAGCAGTGCACAAGGCTAATATCATGAAA-TTGGCTGATGG 717
Query 651 TTTGTTCTTGGAATCTTGTCGGGAGGTTGCTAAAAAGTATCCGAGCATCACCTACAATGA 710
|||||||||||| ||||||| ||||||||||| |||||||| ||||| | ||||||||
Sbjct 718 TTTGTTCTTGGAGTCTTGTCAAGAGGTTGCTAAGAAGTATCCAAGCATTGCTTACAATGA 777
Query 711 AATCATTGTTGATAACTGCTGTATGCAACTTGTAGCGAAACCAGAGCAATTCGATGTCAT 770
||||||||||||||| || |||||||||||||| || | |||||||||||||||||||||
Sbjct 778 AATCATTGTTGATAATTGTTGTATGCAACTTGTGGCTAGACCAGAGCAATTCGATGTCAT 837
Query 771 GGTAACGCCCAATCTCTATGGGAATTTAGTTGCAAACACTGCTGCTGGTATTGCTGGAGG 830
||| ||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 838 GGTGACGCCTAATCTCTATGGTAATCTAGTGGCAAACACTGCTGCTGGTATTGCTGGAGG 897
Query 831 CACAGGAGTCATGCCTGGAGGAAATGTTGGGGCTGACCATGCGGTATTCGAGCAAGGTGC 890
|| ||||||||||||||||||||||||||||| || ||||||| || |||||||||||
Sbjct 898 TACTGGAGTCATGCCTGGAGGAAATGTTGGGGCGGAGTATGCGGTCTTTGAGCAAGGTGC 957
Query 891 ATCAGCAGGAAATGTTGGGAAAGATA-AGATAGTATTGGAAAACAAAGCAAACCCAGTGG 949
|||||| ||||| || ||||| |||| | | | | | |||| || |||||||| ||||
Sbjct 958 ATCAGCGGGAAACGTGGGGAAGGATACA-ACGGAAGAGCAAAAGAATGCAAACCCTGTGG 1016
Query 950 CATTGCTT-CTCTCATCAGCGATGATGCTAAGACACCTTCAGTTTCCTTCATTTGCTGAC 1008
| ||| || || |||||||| |||||||| |||||||||||||| ||||| |||||||||
Sbjct 1017 CTTTG-TTGCTGTCATCAGCCATGATGCTTAGACACCTTCAGTTCCCTTCTTTTGCTGAC 1075
Query 1009 CGGCTTGAAACAGCAGTGAAGAAAGTCATCGCTGAAGGAAAGTGCCGGAC-GAAAGATCT 1067
|||||||||| || |||||| || ||||||||||| || || ||||| ||| |||||
Sbjct 1076 AGGCTTGAAACCGCTGTGAAGCGTGTTATCGCTGAAGGGAATTGTCGGACTGAA-GATCT 1134
Query 1068 TGGTGGCA-CAAGCACGACTCAAGAGGTCGTTGATGCGGTCATTGCAAAATTAGACTGAC 1126
|||||| | || | || ||||||||||||||||| || ||||||||||| || || ||||
Sbjct 1135 TGGTGGAAACA-GTACCACTCAAGAGGTCGTTGACGCTGTCATTGCAAATTTGGATTGAC 1193
Query 1127 TTTGACAA 1134
|| |||||
Sbjct 1194 TT-GACAA 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60943461630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5