BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944375
Length=720
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35190.1 | Symbols: | Putative lysine decarboxylase family ... 1175 0.0
> AT4G35190.1 | Symbols: | Putative lysine decarboxylase family
protein | chr4:16746599-16748266 FORWARD LENGTH=988
Length=988
Score = 1175 bits (636), Expect = 0.0
Identities = 697/725 (96%), Gaps = 9/725 (1%)
Strand=Plus/Plus
Query 1 GTAAACTGATTTGGCTAAGAGAATGGAAATAGTGAAGTCGAGGTTCAAGAGGGTTTGTGT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 104 GTAAACTGATTTGGCTAAGAAAATGGAAATAGTGAAGTCGAGGTTCAAGAGGGTTTGTGT 163
Query 61 GTTCTGTGGTAGCAGCAGCGGAAACAGAGAGTGCTACAGAGATGCTGCCACTGATCTAGC 120
|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 164 GTTCTGTGGTAGCAGCAGCGGAAAGAGAGAGTGCTACAGTGATGCCGCCACTGATCTAGC 223
Query 121 TCAAGAGCTGGTGACGAGGAGATTGAACCTTGTGTATGGAGGAGGAAGCATTGGTCTCAT 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 224 TCAAGAGCTGGTGACGAGGAGATTGAATCTTGTGTATGGAGGAGGAAGCATTGGTCTCAT 283
Query 181 GGGTTTGGTCTCACAAGCTGTTCATGAAGCTGGAGGACATGTACTAGGGATCATACCAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GGGTTTGGTCTCACAAGCTGTTCATGAAGCTGGAGGACATGTACTAGGGATCATACCAAG 343
Query 241 GACTCTTATGGACAAAGAGATAACCGGAGAAACATATGGTGAGGTAAAAGCTGTGGCGGA 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 344 GACTCTTATGGACAAAGAGATAACCGGAGAAACATATGGTGAGGTAATAGCTGTGGCGGA 403
Query 301 TATGCATGAAAGGAAAGCCGAAATGGCACGCCACTCGGATTGTTTCATTGCATTACCAGG 360
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 404 TATGCATGAAAGAAAAGCCGAAATGGCACGCCACTCGGATTGTTTCATTGCTTTACCAGG 463
Query 361 TGGGTATGGAACACTGGAGGAGTTATTGGAAGTAATAGCATGGGCACAACTTGGAATCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 464 TGGGTATGGAACACTGGAGGAGTTATTGGAAGTAATAGCATGGGCACAACTTGGAATTCA 523
Query 421 CGACAAACCTGTGGGTTTGTTAAATGTGGATGGTTATTACAATTACCTCCTTACTTTCAT 480
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 524 CGACAAGCCTGTGGGTTTGTTAAATGTGGATGGTTATTACAATTACCTCCTCACTTTCAT 583
Query 481 TGATAAAGCCGTTGATGATGGCTTTATCAAGCCATCTCAGCGTCACATCTTTGTCTCAGC 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 584 TGATAAAGCCGTTGATGATGGCTTTATCAAACCATCTCAGCGTCACATCTTTGTCTCAGC 643
Query 541 CCCTAATGCCAAAGAGCTTGTCCAAAAACTTGAGGCATATGAGCCAGTGAGTGATGGAGT 600
||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 644 CCCCAATGCCAAAGAGCTTGTCCAAAAACTTGAGGCATACAAGCCAGTGAATGATGGAGT 703
Query 601 CATAGCAAAATCTAGGTGGGAGGTTGAGAAGAAAGTGCAACAGCCGCAACAA--G----- 653
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 704 CATAGCTAAATCTAGGTGGGAGGTTGAGAAGAAAGTGCAACAGCCGCAACAACAGCAACA 763
Query 654 --TAGTGTTCTGTTCTAACACAAGCATGCAGACTGAGATTGCTCTCTAGACTTTTAGAGG 711
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 764 AGTAGTGTTCTGTTCTAACACAAGCATGCAGACTGAGATTGCCCTTTAGACTTTTAGAGG 823
Query 712 GTCTT 716
|||||
Sbjct 824 GTCTT 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34912732165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5