BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944378
Length=407
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35165.1 | Symbols: | Protein of unknown function (DUF1278)... 604 1e-172
AT2G14378.1 | Symbols: | Protein of unknown function (DUF1278)... 551 2e-156
> AT4G35165.1 | Symbols: | Protein of unknown function (DUF1278)
| chr4:16735123-16735883 FORWARD LENGTH=761
Length=761
Score = 604 bits (327), Expect = 1e-172
Identities = 383/409 (94%), Gaps = 8/409 (2%)
Strand=Plus/Plus
Query 1 CAAATAGAAGTCAAAGAGAGATGGGAAACAATCCAAGAGCTATTTTCTCTTTATTCTTAG 60
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
Sbjct 150 CAAATAGAAGTCAAAGATAGATGGGAAACAATTCAAGAGCTATTTTCTCTTTATTCTTGG 209
Query 61 TTGTAGCCATATGTGCTGCAATTTTAATCACTCCTGGAATAGCTCATGACG-ACAAAGCA 119
|||||||| |||||||||||||||||||||| || |||||||||||||| | || || ||
Sbjct 210 TTGTAGCCTTATGTGCTGCAATTTTAATCACCCCCGGAATAGCTCATGATGAAC-AACCA 268
Query 120 CCGCCGCGCTCACAATTTCCACCGGATTTTCCTATTGATTTGGAAAAATGTTGGTCATCA 179
||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 269 CCGCCCCGCTCACAATTTCCACCGGATTTTCCTATTGATGTGGAAAAATGTTGGGCATCA 328
Query 180 CTTTTCAATACTCAGGGATGCGTATTCGAACTTTTGAAGTCAGTTTTTTCTGGTCAGTTT 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 329 CTTTTCAATACTCAGGGATGCGTATTCGAACTTTTAAAGTCAGTTTTTTCTGGTCAGTTT 388
Query 240 GGAAATGTTGGAGTTGCATGTTGCAAAGCATTCTCGACCATAGATGCTAACTGTTGGCCT 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 389 GGAAATGTTGGAGTTGCATGTTGCAAAGCATTGTCGACCATAGATGCTAACTGTTGGCCT 448
Query 300 CATATGTTTCCG-TTAAACCCATTCTTTCCACCTTTGCTTAAGGACAACTGTGCGCACAT 358
|||||||| ||| |||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct 449 CATATGTTCCCGCTTAA-CCCGTTCTTTCCACCTCTGCTTAAGGACAACTGTGCGCACAT 507
Query 359 CGTCCCCAATTCCCCCACAACCAAGTGAAAGCGAGGAATCAAGTGACTT 407
|||||||||||| ||| ||| | ||||||||| |||||||||||||||
Sbjct 508 CGTCCCCAATTCTCCCTCAA--A-GTGAAAGCG-GGAATCAAGTGACTT 552
> AT2G14378.1 | Symbols: | Protein of unknown function (DUF1278)
| chr2:6104869-6105231 REVERSE LENGTH=363
Length=363
Score = 551 bits (298), Expect = 2e-156
Identities = 340/360 (94%), Gaps = 4/360 (1%)
Strand=Plus/Plus
Query 21 ATGGGAAACAATCCAAGAGCTATTTTCTCTTTATTCTTAGTTGTAGCCATATGTGCTGCA 80
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGGAAACAATTCAAGAGCTATTTTCTCTTTATTCTTAGTTGTAGCCTTATGTGCTGCA 60
Query 81 ATTTTAATCACTCCTGGAATAGCTCATGACGA-CAAAGCACCGCCGCGCTCACAATTTCC 139
|||||||||||||| |||||||||||||| || ||| ||||||| ||||||||||||||
Sbjct 61 ATTTTAATCACTCCCGGAATAGCTCATGATGAACAAC-CACCGCCCCGCTCACAATTTCC 119
Query 140 ACCGGATTTTCCTATTGATTTGGAAAAATGTTGGTCATCACTTTTCAATACTCAGGGATG 199
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 120 ACCGGATTTTCCTATTGATGTGGAAAAATGTTGGTCATCACTTTTCAATACTCAAGGATG 179
Query 200 CGTATTCGAACTTTTGAAGTCAGTTTTTTCTGGTCAGTTTGGAAATGTTGGAGTTGCATG 259
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 180 CGTATTCGAACTTTTGAAGTCAGTTTTTTCTGGTCGGTTTGGAGATGTTGGAGTTGCATG 239
Query 260 TTGCAAAGCATTCTCGACCATAGATGCTAACTGTTGGCCTCATATGTTTCCG-TTAAACC 318
||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| ||
Sbjct 240 TTGCAAAGCATTCTCGACCGTAGATGCTAACTGTTGGCCTCATATGTTCCCGCTTAA-CC 298
Query 319 CATTCTTTCCACCTTTGCTTAAGGACAACTGTGCGCACATCGTCCCCAATTCCCCCACAA 378
| |||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 299 CGTTCTTTCCACCTCTGCTTAAGGACAACTGTGCGCACATCGTACCCAATTCCCCCTCAA 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19252547867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5