BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944383

Length=1106
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35120.1 | Symbols:  | Galactose oxidase/kelch repeat superf...  86.1    7e-16


> AT4G35120.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr4:16716806-16718017 FORWARD LENGTH=1170
Length=1170

 Score = 86.1 bits (46),  Expect = 7e-16
 Identities = 76/90 (84%), Gaps = 4/90 (4%)
 Strand=Plus/Plus

Query  924   GGGTTT-GAGTGATCTGTA-TATGAAGCGTGCTAGTAATTACCGCACGATTCAATTAGTT  981
             |||||| || || ||| ||  || ||||||| | ||   ||||| |||||||| ||||||
Sbjct  882   GGGTTTGGA-TGTTCTATACGAT-AAGCGTGGTTGTGGCTACCGTACGATTCAGTTAGTT  939

Query  982   AACTATGGTGGGAAACTGTTAATTATATGG  1011
             ||||||||||||||||||||||||||||||
Sbjct  940   AACTATGGTGGGAAACTGTTAATTATATGG  969



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 54216588600


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5