BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944384 Length=1240 Score E Sequences producing significant alignments: (Bits) Value AT4G35120.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1107 0.0 > AT4G35120.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:16716806-16718017 FORWARD LENGTH=1170 Length=1170 Score = 1107 bits (599), Expect = 0.0 Identities = 756/831 (91%), Gaps = 13/831 (2%) Strand=Plus/Plus Query 21 ATGGACACCGCCAAAGTAGAAGAACCGCAGGAAACGAAGAAGACGACTCTTACAGCTCAA 80 ||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||| Sbjct 1 ATGGACACCGCCAAAGTAGAACCACCTCAGGAAACGAAGAAGACGATTCTCACAGCTCAA 60 Query 81 ACTCCATTATCTATGTCGATTTCATCACTTCCAGATGAAATCGTTTTAAGTTTCTTAGCC 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACTCCATTATCTATGTCGATTTCATCACTTCCAGATGAAATCGTTTTAAGTTTCTTAGCC 120 Query 141 CGGATCTCTAAATCTTACTACCGTTCCCTCTCTTTAGTCTCCAAGAGCTTTTACGCTCTT 200 | |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 121 CTGATCTCTAAATCGTACTACCGTTCCCTCTCTTTAGTCTCCAAAAGCTTTTACTCTCTT 180 Query 201 CTCTCTTCTACAGAGATCTACGCGGCCCAATCCCACATCGGAGCCACAGAGCCTCGCCTC 260 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| | Sbjct 181 CTCTCTTCTACAGAGATCTACGCGGCCCGATCCCACATCGGAGCGACAGAGCCTTGCC-C 239 Query 261 -TACGTGTGCCTGTGGTTACTCAACAAGCATCGCTGGTTCACTCTCGCCGAGATTGAGGG 319 ||||||||||||||||||| ||| || |||||||||||||| || |||||||||||||| Sbjct 240 GTACGTGTGCCTGTGGTTACCCAAAAAACATCGCTGGTTCACCCTAGCCGAGATTGAGGG 299 Query 320 TGAACTAAGTCTAGTACCGGTAAAGCTCTCTTCCTCGTT-TCCTTTTACTCGATTAAACT 378 | |||||||| ||| |||||||| |||||||||||| || |||| ||||||| |||||| Sbjct 300 TAAACTAAGTTTAGAACCGGTAAGGCTCTCTTCCTC-TTATCCTCGTACTCGAGTAAACT 358 Query 379 CAACCACTGTAGCTGCTGGTTCCGAAATCTACAAAATCGGCGGAACTGTCAAGGGAAAGC 438 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 359 CAACCACTGTAGCTGCTGGTACCGAAATCTACAAAATCGGCGGAACTGTCAAGGGCAAGC 418 Query 439 CATCCAGAGCCGTTTTTGTACT-GAATTGTCAGACTCACAGGTGGCGTCATGCTCCTAAG 497 ||||||||| ||||||||||| || |||| ||||||||||||||||| ||||||||| Sbjct 419 GATCCAGAGCTGTTTTTGTACTTGA-TTGTTGGACTCACAGGTGGCGTCGTGCTCCTAAC 477 Query 498 ATGA-AGGTGTCAAGGGTACACGCAAAGTCTTGTTTTTTAGACGGGAAGATATATGTAAT 556 |||| || ||||||||||| ||| |||||||||||||||||||| || ||||||||||| Sbjct 478 ATGAGAG-TGTCAAGGGTAGGCGCCAAGTCTTGTTTTTTAGACGGAAATATATATGTAAT 536 Query 557 GGGAGGATGCAGAAAGAGTGAGGAAGAATCCATGAATTGGGGTGAGGTTTTCGACCTAAA 616 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 537 AGGAGGATGCAGAAAGAGTGAGGAAGAATCCATGAATTGTGGTGAAGTTTTCGACCTAAA 596 Query 617 GACTC-GAACTTGGAAGCCGTTGCCTAGCCCTAGTG--A-TGGTGCCGTCGATTCGAATC 672 ||||| || ||||||| ||| ||||||||||||||| | | ||||||| ||||||||| Sbjct 597 GACTCAGA-CTTGGAATCCGCTGCCTAGCCCTAGTGTTAATTATGCCGTCCATTCGAATC 655 Query 673 ACAAAGTAGCAGTTTTTGGAGAAAGGCTATACGTAATCACCAAGCATAAAAAATATGCAT 732 ||||||| ||||||| ||||||||||||||||||||||||||||| ||| || ||||||| Sbjct 656 ACAAAGTTGCAGTTTCTGGAGAAAGGCTATACGTAATCACCAAGCGTAACAACTATGCAT 715 Query 733 ATGATCCGAAAGAAGGAAGATGGCTAGCAGAGGTGGGGTTTGTGGATCTAGAACCTATAA 792 |||||||||| ||||||||||||||| |||| ||||||| ||||||| || |||| |||| Sbjct 716 ATGATCCGAATGAAGGAAGATGGCTACCAGACGTGGGGTCTGTGGATTTACAACCCATAA 775 Query 793 CTGGAACTCGGTCCGGTGGCATAGAAAAAGTTATGCAACCTATAACTGGAC 843 ||||| || ||||||| || ||||||||||||||| ||||||||||||||| Sbjct 776 CTGGACCTTGGTCCGGCGGTATAGAAAAAGTTATGAAACCTATAACTGGAC 826 Score = 185 bits (100), Expect = 7e-46 Identities = 147/169 (87%), Gaps = 5/169 (3%) Strand=Plus/Plus Query 1053 ATTCACAGTGAAGAG-AGGACAATTTGGTGTGCGGTGATTCGGTTGGAGGAGCGTATGTT 1111 |||| ||| ||||| |||| |||||||||||| |||||| ||||||||||||||||| | Sbjct 1006 ATTCGCAGCCAAGAGAAGGA-AATTTGGTGTGCTGTGATTAGGTTGGAGGAGCGTATG-T 1063 Query 1112 ACCCCATTTTGGACCCTGGATCTGCGGGGAGGTTGAGAGCTGTAATGTTGTTGTGCCTAG 1171 | |||| |||||| ||| || ||||||||||||||||| ||||||||||||||||| Sbjct 1064 --CTTATTTCGGACCCCAGATTTGGGGGGAGGTTGAGAGCTGCAATGTTGTTGTGCCTAG 1121 Query 1172 CGTCCCCAAGTCTTATAAGCTCTCAAGCTGCCAATGTGTTTTTGTCTGA 1220 |||||||||||||||| |||||||||| ||||||||||||| |||||| Sbjct 1122 CGTCCCCAAGTCTTATCAGCTCTCAAGTTGCCAATGTGTTTCGGTCTGA 1170 Score = 102 bits (55), Expect = 7e-21 Identities = 79/90 (88%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 954 GGTTTGAATGATCTATACGAAAAGCGTGGTTTTCATTATTACCGTACGATTAAGTTAGTT 1013 |||||| ||| ||||||||| |||||||| || | |||||||||||| |||||||| Sbjct 883 GGTTTGGATGTTCTATACGATAAGCGTGG--TT-GTGGCTACCGTACGATTCAGTTAGTT 939 Query 1014 AACTATGGTGGGAAACTGTTAATTATATGG 1043 |||||||||||||||||||||||||||||| Sbjct 940 AACTATGGTGGGAAACTGTTAATTATATGG 969 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60943461630 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5