BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944384
Length=1240
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35120.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1107 0.0
> AT4G35120.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:16716806-16718017 FORWARD LENGTH=1170
Length=1170
Score = 1107 bits (599), Expect = 0.0
Identities = 756/831 (91%), Gaps = 13/831 (2%)
Strand=Plus/Plus
Query 21 ATGGACACCGCCAAAGTAGAAGAACCGCAGGAAACGAAGAAGACGACTCTTACAGCTCAA 80
||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||
Sbjct 1 ATGGACACCGCCAAAGTAGAACCACCTCAGGAAACGAAGAAGACGATTCTCACAGCTCAA 60
Query 81 ACTCCATTATCTATGTCGATTTCATCACTTCCAGATGAAATCGTTTTAAGTTTCTTAGCC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTCCATTATCTATGTCGATTTCATCACTTCCAGATGAAATCGTTTTAAGTTTCTTAGCC 120
Query 141 CGGATCTCTAAATCTTACTACCGTTCCCTCTCTTTAGTCTCCAAGAGCTTTTACGCTCTT 200
| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 121 CTGATCTCTAAATCGTACTACCGTTCCCTCTCTTTAGTCTCCAAAAGCTTTTACTCTCTT 180
Query 201 CTCTCTTCTACAGAGATCTACGCGGCCCAATCCCACATCGGAGCCACAGAGCCTCGCCTC 260
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| |
Sbjct 181 CTCTCTTCTACAGAGATCTACGCGGCCCGATCCCACATCGGAGCGACAGAGCCTTGCC-C 239
Query 261 -TACGTGTGCCTGTGGTTACTCAACAAGCATCGCTGGTTCACTCTCGCCGAGATTGAGGG 319
||||||||||||||||||| ||| || |||||||||||||| || ||||||||||||||
Sbjct 240 GTACGTGTGCCTGTGGTTACCCAAAAAACATCGCTGGTTCACCCTAGCCGAGATTGAGGG 299
Query 320 TGAACTAAGTCTAGTACCGGTAAAGCTCTCTTCCTCGTT-TCCTTTTACTCGATTAAACT 378
| |||||||| ||| |||||||| |||||||||||| || |||| ||||||| ||||||
Sbjct 300 TAAACTAAGTTTAGAACCGGTAAGGCTCTCTTCCTC-TTATCCTCGTACTCGAGTAAACT 358
Query 379 CAACCACTGTAGCTGCTGGTTCCGAAATCTACAAAATCGGCGGAACTGTCAAGGGAAAGC 438
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 359 CAACCACTGTAGCTGCTGGTACCGAAATCTACAAAATCGGCGGAACTGTCAAGGGCAAGC 418
Query 439 CATCCAGAGCCGTTTTTGTACT-GAATTGTCAGACTCACAGGTGGCGTCATGCTCCTAAG 497
||||||||| ||||||||||| || |||| ||||||||||||||||| |||||||||
Sbjct 419 GATCCAGAGCTGTTTTTGTACTTGA-TTGTTGGACTCACAGGTGGCGTCGTGCTCCTAAC 477
Query 498 ATGA-AGGTGTCAAGGGTACACGCAAAGTCTTGTTTTTTAGACGGGAAGATATATGTAAT 556
|||| || ||||||||||| ||| |||||||||||||||||||| || |||||||||||
Sbjct 478 ATGAGAG-TGTCAAGGGTAGGCGCCAAGTCTTGTTTTTTAGACGGAAATATATATGTAAT 536
Query 557 GGGAGGATGCAGAAAGAGTGAGGAAGAATCCATGAATTGGGGTGAGGTTTTCGACCTAAA 616
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 537 AGGAGGATGCAGAAAGAGTGAGGAAGAATCCATGAATTGTGGTGAAGTTTTCGACCTAAA 596
Query 617 GACTC-GAACTTGGAAGCCGTTGCCTAGCCCTAGTG--A-TGGTGCCGTCGATTCGAATC 672
||||| || ||||||| ||| ||||||||||||||| | | ||||||| |||||||||
Sbjct 597 GACTCAGA-CTTGGAATCCGCTGCCTAGCCCTAGTGTTAATTATGCCGTCCATTCGAATC 655
Query 673 ACAAAGTAGCAGTTTTTGGAGAAAGGCTATACGTAATCACCAAGCATAAAAAATATGCAT 732
||||||| ||||||| ||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 656 ACAAAGTTGCAGTTTCTGGAGAAAGGCTATACGTAATCACCAAGCGTAACAACTATGCAT 715
Query 733 ATGATCCGAAAGAAGGAAGATGGCTAGCAGAGGTGGGGTTTGTGGATCTAGAACCTATAA 792
|||||||||| ||||||||||||||| |||| ||||||| ||||||| || |||| ||||
Sbjct 716 ATGATCCGAATGAAGGAAGATGGCTACCAGACGTGGGGTCTGTGGATTTACAACCCATAA 775
Query 793 CTGGAACTCGGTCCGGTGGCATAGAAAAAGTTATGCAACCTATAACTGGAC 843
||||| || ||||||| || ||||||||||||||| |||||||||||||||
Sbjct 776 CTGGACCTTGGTCCGGCGGTATAGAAAAAGTTATGAAACCTATAACTGGAC 826
Score = 185 bits (100), Expect = 7e-46
Identities = 147/169 (87%), Gaps = 5/169 (3%)
Strand=Plus/Plus
Query 1053 ATTCACAGTGAAGAG-AGGACAATTTGGTGTGCGGTGATTCGGTTGGAGGAGCGTATGTT 1111
|||| ||| ||||| |||| |||||||||||| |||||| ||||||||||||||||| |
Sbjct 1006 ATTCGCAGCCAAGAGAAGGA-AATTTGGTGTGCTGTGATTAGGTTGGAGGAGCGTATG-T 1063
Query 1112 ACCCCATTTTGGACCCTGGATCTGCGGGGAGGTTGAGAGCTGTAATGTTGTTGTGCCTAG 1171
| |||| |||||| ||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1064 --CTTATTTCGGACCCCAGATTTGGGGGGAGGTTGAGAGCTGCAATGTTGTTGTGCCTAG 1121
Query 1172 CGTCCCCAAGTCTTATAAGCTCTCAAGCTGCCAATGTGTTTTTGTCTGA 1220
|||||||||||||||| |||||||||| ||||||||||||| ||||||
Sbjct 1122 CGTCCCCAAGTCTTATCAGCTCTCAAGTTGCCAATGTGTTTCGGTCTGA 1170
Score = 102 bits (55), Expect = 7e-21
Identities = 79/90 (88%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 954 GGTTTGAATGATCTATACGAAAAGCGTGGTTTTCATTATTACCGTACGATTAAGTTAGTT 1013
|||||| ||| ||||||||| |||||||| || | |||||||||||| ||||||||
Sbjct 883 GGTTTGGATGTTCTATACGATAAGCGTGG--TT-GTGGCTACCGTACGATTCAGTTAGTT 939
Query 1014 AACTATGGTGGGAAACTGTTAATTATATGG 1043
||||||||||||||||||||||||||||||
Sbjct 940 AACTATGGTGGGAAACTGTTAATTATATGG 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60943461630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5