BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944385
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35120.1 | Symbols: | Galactose oxidase/kelch repeat superf... 760 0.0
> AT4G35120.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:16716806-16718017 FORWARD LENGTH=1170
Length=1170
Score = 760 bits (411), Expect = 0.0
Identities = 503/548 (92%), Gaps = 4/548 (1%)
Strand=Plus/Plus
Query 342 GAGATTGAGGGTGAATTAAGTTTAGTACCGGTAAGGCTCTCTTCCTCCAATCCTCCCGCT 401
|||||||||||| || ||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 289 GAGATTGAGGGTAAACTAAGTTTAGAACCGGTAAGGCTCTCTTCCTCTTATCCTCGTACT 348
Query 402 CG-GTTAAAGTCAACCACTGTAGCTGTC-GGTTCCGAAATCTACCAAATCGGCGGAACCG 459
|| | |||| |||||||||||||||| | ||| ||||||||||| ||||||||||||| |
Sbjct 349 CGAG-TAAACTCAACCACTGTAGCTG-CTGGTACCGAAATCTACAAAATCGGCGGAACTG 406
Query 460 TCAACGGCAAGCGATCTAAAGCCGTTGGTGTGCTTGATTGTCGAAGTCATACATGGCGAC 519
|||| ||||||||||| | ||| ||| ||| ||||||||| | | ||| | ||||| |
Sbjct 407 TCAAGGGCAAGCGATCCAGAGCTGTTTTTGTACTTGATTGTTGGACTCACAGGTGGCGTC 466
Query 520 GTGCTCCTAACATGAGAGTGTCAAGGGTAGGCGCCAAGTCTTGTTTTTTAGACGGACATA 579
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 467 GTGCTCCTAACATGAGAGTGTCAAGGGTAGGCGCCAAGTCTTGTTTTTTAGACGGAAATA 526
Query 580 TATATGTAATAGGAGGATGCAGAAAGAGTGAGGAAGAATCCAAGAATTGGGGTGAGGTTT 639
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 527 TATATGTAATAGGAGGATGCAGAAAGAGTGAGGAAGAATCCATGAATTGTGGTGAAGTTT 586
Query 640 TCGACCTAAAGACTCAGACTTGGAATCCATTGCCTAGCCCTAGTGATAATTATGCCGTGG 699
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 587 TCGACCTAAAGACTCAGACTTGGAATCCGCTGCCTAGCCCTAGTGTTAATTATGCCGTCC 646
Query 700 ATTCGAATCACAAAGTTGCAGTTTTTGGAGAAAGGCTATACGTAATCACCAAGCATAACA 759
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 647 ATTCGAATCACAAAGTTGCAGTTTCTGGAGAAAGGCTATACGTAATCACCAAGCGTAACA 706
Query 760 ACTATGCATATGCTCCGAATGAAGTAAGATGGCTACCAGACGTGGGGTCTGTGGATCTAC 819
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 707 ACTATGCATATGATCCGAATGAAGGAAGATGGCTACCAGACGTGGGGTCTGTGGATTTAC 766
Query 820 AACCCATAACTGGACCTTGGTGCGGCGGTATAGAAAAAGTTATGAAACCTATAACTGGAC 879
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 767 AACCCATAACTGGACCTTGGTCCGGCGGTATAGAAAAAGTTATGAAACCTATAACTGGAC 826
Query 880 GACCTTGG 887
||||||||
Sbjct 827 GACCTTGG 834
Score = 481 bits (260), Expect = 8e-135
Identities = 315/341 (92%), Gaps = 6/341 (2%)
Strand=Plus/Plus
Query 925 GGAAGTACAGGTGGTATAGCTCAAGTCATGGAGCGTGGCTAAGAGTTGA-AGGTTTGCAT 983
||||||||| ||||||||||||||||||| ||||||||| ||||||| | |||||| ||
Sbjct 833 GGAAGTACACGTGGTATAGCTCAAGTCATCGAGCGTGGCAAAGAGTT-ATGGGTTTGGAT 891
Query 984 GATCTATACGCTAAGCGTCGTTTTGAG-TACCGTACGATTCAGTTAGTTAACTATGGTGG 1042
| |||||||| ||||||| ||| || | ||||||||||||||||||||||||||||||||
Sbjct 892 GTTCTATACGATAAGCGTGGTTGTG-GCTACCGTACGATTCAGTTAGTTAACTATGGTGG 950
Query 1043 GAAACTGTTAATTATATGG-GACGAGTGGGTCATGATCCTAGACAGGAATTACCTTATTC 1101
||||||||||||||||||| | ||||||| ||||||| |||||| || ||| ||||||||
Sbjct 951 GAAACTGTTAATTATATGGAG-CGAGTGGATCATGATTCTAGACGGGTATTCCCTTATTC 1009
Query 1102 GCAGCCAAGACAAGCAAATTTGGTGTGCTGTGATTAGGTTGGAGGAGCGTATGTCTTATT 1161
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GCAGCCAAGAGAAGGAAATTTGGTGTGCTGTGATTAGGTTGGAGGAGCGTATGTCTTATT 1069
Query 1162 TGGGACCCCAGATTTGGGGGCAGGTTGAGAGCTGCAATGTTGTTGTGCCTAGCGTCCCCA 1221
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TCGGACCCCAGATTTGGGGGGAGGTTGAGAGCTGCAATGTTGTTGTGCCTAGCGTCCCCA 1129
Query 1222 AGTCTTATAAGCTCTCAAGCTGCCAATGTGTTTCGGTCTGA 1262
|||||||| |||||||||| |||||||||||||||||||||
Sbjct 1130 AGTCTTATCAGCTCTCAAGTTGCCAATGTGTTTCGGTCTGA 1170
Score = 425 bits (230), Expect = 4e-118
Identities = 265/282 (94%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 21 ATGGACACCGCCAAAGTAGAAGAACCGCAGGAAACGAAGAAGACGACTCTTACAGCTCAA 80
||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||
Sbjct 1 ATGGACACCGCCAAAGTAGAACCACCTCAGGAAACGAAGAAGACGATTCTCACAGCTCAA 60
Query 81 ACTCCATTATCTATGTCGATTTCATCACTTCCAGATGAAATCGTTTTAAGTTTCTTAGCC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTCCATTATCTATGTCGATTTCATCACTTCCAGATGAAATCGTTTTAAGTTTCTTAGCC 120
Query 141 CGGATCTCTAAATCTTACTACCGTTCCCTCTCTTTAGTCTCCAAGAGCTTTTACGCTCTT 200
| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 121 CTGATCTCTAAATCGTACTACCGTTCCCTCTCTTTAGTCTCCAAAAGCTTTTACTCTCTT 180
Query 201 CTCTCTTCTACAGAGATCTACGCGGCCCGACCCCACATCGGAGCCACAGAGCCTCGCCTC 260
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| |
Sbjct 181 CTCTCTTCTACAGAGATCTACGCGGCCCGATCCCACATCGGAGCGACAGAGCCTTGCC-C 239
Query 261 -TACGTGTGCCTGTGGTTACTCAACAAGCATCGCTGGTTCAC 301
||||||||||||||||||| ||| || ||||||||||||||
Sbjct 240 GTACGTGTGCCTGTGGTTACCCAAAAAACATCGCTGGTTCAC 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63051884520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5