BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944390
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35080.3 | Symbols: | high-affinity nickel-transport family... 1347 0.0
> AT4G35080.3 | Symbols: | high-affinity nickel-transport family
protein | chr4:16698334-16700321 FORWARD LENGTH=1529
Length=1529
Score = 1347 bits (729), Expect = 0.0
Identities = 785/813 (97%), Gaps = 0/813 (0%)
Strand=Plus/Plus
Query 331 ACGTTATCTACTGGAACTGTCATACTAATCTCTGCAGTAGCTGCGCTTTTCCTTAACCCG 390
||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||
Sbjct 429 ACGTTATCTACTGGAACCGTTATACTAATCTCTGCAGTAGCTGTGCTTTTGCTTAACCCG 488
Query 391 CTTCTTGCACCACCTGCTTTCGCTAGCTTTCAAACTGCAGCTAAATCCGGTTGGCTAACA 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CTTCTTGCACCACCTGCTTTCGCTAGCTTTCAAACTGCAGCTAAATCCGGTTGGCTAACA 548
Query 451 AGTGCGTGGACTGGTTTCCTTGCTGGTTGCTTGCACACGCTCTCAGGACCTGATCACCTC 510
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 AGTGCGTGGACCGGTTTCCTTGCTGGTTGCTTGCACACGCTCTCAGGACCTGATCACCTC 608
Query 511 GCTGCTTTGGCTCCGCTTTCAATCGGACGCAGCAAAATGGAAAGTGCTGCTGTTGGAGCT 570
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 609 GCTGCTTTAGCTCCGCTTTCGATCGGACGCAGCAAAATGGAAAGTGCTGCTGTTGGAGCT 668
Query 571 CTCTGGGGATGTGGACACGACGCTGGTCAAGTCATCTTTGGTTTACTGTTTCTGCTACTT 630
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTCTGGGGATGTGGGCATGATGCTGGTCAAGTCATCTTTGGTTTACTGTTTCTGCTACTT 728
Query 631 AAAGACCGGCTCCACATCGAAGTATTACAAACTTGGGGTACAAGAATTGTGGGATTGACA 690
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AAAGACCGGCTTCACATTGAAGTATTACAAACTTGGGGTACAAGAATTGTGGGATTGACT 788
Query 691 CTTGTTATCATCGGTGCTATGGGAATCAAGGAAGCTTCCGAGATTCCAGAACCTTGTGTT 750
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 789 CTTGTTATTATCGGTGCTATGGGAATCAAGGAAGCTTCTGAGATTCCAGAACCTTGTGTC 848
Query 751 GCCTTAGAAACCGACATCAGCATGGTATCAACAGAGAAAGAAGCCTTACCACTGCCCAAA 810
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GCTTTAGAAACCGACATCAGCATGGTATCAACAGAGAAAGAAGCCTTACCACTGCCCAAA 908
Query 811 AAGAAGAAGATCGGGTTTGCTACATTTGCAACTGGAGTGGTTCACGGGTTGCAACCGGAT 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 AAGAAGAAGATCGGGTTTGCTACATTTGCAACTGGAGTGGTTCACGGGTTGCAACCGGAT 968
Query 871 GCTCTGATGATTGTTTTGCCTGCATTAGCTCTGCCATCTCGGTTAGCAGGGTCTGCGTTT 930
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 969 GCTCTGATGATTGTTTTGCCTGCATTAGCTCTCCCATCACGGTTAGCAGGGTCTGCGTTT 1028
Query 931 CTGATAATGTTTCTGGTTGGGACGGTTATCGCCATGGGAAGTTACACAGCGTTTATTGGG 990
|||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1029 TTGATAATGTTTCTGGTTGGGACAGTTATAGCGATGGGAAGTTACACAGCGTTTATTGGG 1088
Query 991 TCTTGTAGTGAGGCGTTGAAAGAGAAGGTTCCAAGGATCACAGAGAAACTAACTTGGGTT 1050
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1089 TCTTGCAGTGAGGCTTTGAAAGAGAAAGTTCCAAGGATCACAGAGAAACTAACTTGGGTT 1148
Query 1051 TCGTCTCTTGTGGCTATTGGTCTTGGATTGGGAATTGTCATCAGCCCTTTCTTTGGTTTT 1110
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TCGTCACTTGTGGCTATTGGTCTTGGATTGGGAATTGTCATCAGCCCTTTCTTTGGTTTT 1208
Query 1111 AGCCTCTACTGAGAAAGTAAAAGCTTCGTCAGG 1143
||||||||||||||||||||||||||| |||||
Sbjct 1209 AGCCTCTACTGAGAAAGTAAAAGCTTCTTCAGG 1241
Score = 472 bits (255), Expect = 5e-132
Identities = 307/332 (92%), Gaps = 4/332 (1%)
Strand=Plus/Plus
Query 1 CTCGCCGAGAGAGAAGGAGACGCCATGGAAAGGCTTCTGCAACCATCTTCTTCCTCGTCA 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 27 CTCGCCGAGAGAGAAGGAGACGCCATGGAAAGGCTTCTTCAACCATCTTCTTCTTCTTCC 86
Query 61 TCAATTTCTCCTTCCAAATTCCCTTCAAGGACTTCTCCTTTCCTTCCTCGTCTCCGCTCA 120
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 87 TCAATTTCTCCTTCCAAATTCCCTTCACGGACTTCTCCTTTCCTTCCCCGTCTCCGCTCA 146
Query 121 TCGAGTCT-AGGCTTTGTCTCGACTCATCGTCCCGAGTCACGCCGAGTCAGCTCAATTTC 179
||| |||| || ||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 147 TCGGGTCTGAG-CTTTGTCTCGACTCACCGGCCCGAGTCACGCCGAGTCAGCTCAATTTC 205
Query 180 CTGCAACAGTTTCCAGAACCCATCAAC-GTATACGTCTATAGGATCTAACATGACTAACA 238
||||||||||| ||||| || ||| | ||||||| ||||||||||||||| |||||||
Sbjct 206 CTGCAACAGTTCCCAGATTCCGTCA-CTGTATACGCCTATAGGATCTAACACAACTAACA 264
Query 239 ATTCCTTCAATGGGTCTCCCCAATCGGAAGAATCGAAACCGAATCCCGGATTGCTCACAC 298
|||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||
Sbjct 265 ATTCCTTCAATGGGTCTCCCAAATCGGATGAATCGAAACCTAATCCCGGATTTCTCACAC 324
Query 299 GGATCGCGACGACGGCTTCTGAGCAGCGAAAG 330
||||||||||| ||||||||||||||||||||
Sbjct 325 GGATCGCGACGTCGGCTTCTGAGCAGCGAAAG 356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5