BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944393
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein /... 2013 0.0
AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin fa... 1242 0.0
> AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein
/ WD-40 repeat family protein | chr4:16682580-16684848 REVERSE
LENGTH=1544
Length=1544
Score = 2013 bits (1090), Expect = 0.0
Identities = 1197/1249 (96%), Gaps = 5/1249 (0%)
Strand=Plus/Plus
Query 13 AGAGAGTGATGGCGGCGGAAGAGGGTAAAGATGAGCCAGGATTGGATCAGGTGGAGGAAG 72
|||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||
Sbjct 90 AGAGAGTGATGGCGGCAGAAGAGGGTAAAGATGAGGCGGGATTGGATCAGGTGGAAGAAG 149
Query 73 AGTTCTCTGTTTGGAAAAGGAACACACCATTTCTCTACGATCTTATGATCTCTCACCCAC 132
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 150 AGTTCTCTATTTGGAAAAGGAACACACCTTTTCTCTACGATCTTATGATCTCTCACCCAC 209
Query 133 TCGAATGGCCATCTCTAACTCTCCATTGGGTCCCTTCGACGCCGATTCCGTACGCGAAAG 192
| |||||||| ||||| |||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 210 TAGAATGGCCTTCTCTTACTCTCCACTGGGTTCCTTCGACGCCGATTCCGTACTCGAAAG 269
Query 193 ATCCTTACTTCGCCGTTCATAAGCTTATCCTAGGGACTCATACCTCCGGTGGTGCCCAGG 252
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 270 ATCCTTACTTTGCCGTCCATAAGCTTATCCTTGGGACTCATACCTCCGGTGGTGCCCAAG 329
Query 253 ATTTTCTAATGGTCGCCGATGTCGTTATTCCGACACCCGACGCTGAACCAGGGTTAGGTG 312
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 330 ATTTTCTAATGGTCGCCGATGTCGTTATTCCGACACCCGACGCTGAACCAGGATTAGGTG 389
Query 313 GAAGAGATCAGGAACCTATCGTCCCTAAGGTGGAGATTAAGCAGAAGATACGTGTTGATG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GAAGAGATCAGGAACCTATCGTCCCTAAGGTGGAGATTAAGCAGAAGATACGTGTTGATG 449
Query 373 GAGAAGTGAACAGAGCGCGGTGTATGCCTCAAAAGCCAACTCTTGTGGGTGCTAAAACAA 432
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 450 GAGAAGTGAACAGAGCGAGGTGTATGCCACAAAAGCCAACTCTTGTGGGTGCTAAAACAA 509
Query 433 GTGGCTCTGAGGTGTTTTTATTTGATTACGCCAGACTCTCTGGAAAGCCCCAAACTAGTG 492
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 510 GTGGCTCTGAGGTGTTTCTGTTTGATTACGCCAGACTCTCTGGAAAGCCCCAAACAAGTG 569
Query 493 AGTGTGATCCTGATCTGAGGCTAATGGGACATGAACAAGAAGGTTATGGATTGGCTTGGA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 AGTGTGATCCTGATCTGAGGCTAATGGGACATGAACAAGAAGGTTATGGATTGGCTTGGA 629
Query 553 GCTCCTTTAAGGAGGGTTATCTTTTGAGTGGGTCACAGGATCAGAGAATCTGCCTTTGGG 612
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 630 GTTCCTTTAAGGAGGGTTATCTTTTGAGTGGCTCACAAGATCAGAGAATCTGCCTTTGGG 689
Query 613 ATGTTTCAGCTACTGCCAGTGATAAGGTTTTGAATCCAATGCATGTGTATGAGGGACATC 672
|||| ||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 690 ATGTCTCAGCGACTGCCACTGATAAAGTTTTGAACCCAATGCATGTGTATGAGGGACATC 749
Query 673 AAAGCATCATTGAAGATGTAGCATGGCACATGAAGAATGAGAATATATTCGGGTCTGCGG 732
|||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 750 AAAGTATCATCGAAGATGTAGCATGGCACATGAAGAATGAAAACATATTCGGGTCTGCGG 809
Query 733 GTGATGATTGTCAATTGGTTATATGGGACTTACGGACAAACCAAATGCAACACCAAGTCA 792
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 810 GTGATGATTGTCAATTGGTGATATGGGACTTACGGACTAACCAAATGCAACACCAAGTCA 869
Query 793 AAGTTCACGAGAGAGAGATAAACTATCTTTCTTTCAATCCATTTAATGAATGGGTACTAG 852
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 870 AAGTTCACGAGAGAGAGATAAACTATCTTTCTTTCAATCCCTTCAATGAATGGGTACTAG 929
Query 853 CCACAGCTTCCTCAGACTCGACTGTCGCCTTGTTTGACCTTCGTAAGCTGACTGCGCCAT 912
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 930 CCACAGCTTCCTCAGACTCAACTGTCGCCTTGTTTGACCTTCGTAAGCTGACTGCGCCAT 989
Query 913 TACATGTCCTGAGCAGACACGAGGGAGAAGTTTTCCAAGTGGAGTGGGATCCGAACCATG 972
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 990 TACATGTCCTGAGCAAACACGAGGGAGAAGTTTTCCAAGTGGAGTGGGATCCCAACCATG 1049
Query 973 AAACAGTGCTTGCATCTTCTGGCGAGGACAGAAGACTCATGGTCTGGGATATCAATAGGG 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1050 AAACAGTGCTTGCATCTTCTGGCGAGGACAGAAGACTCATGGTCTGGGATATCAACAGGG 1109
Query 1033 TCGGGGATGAGCAGCTTGAAATAGAGTTGGATGCAGAAGATGGTCCACCTGAGCTGCTCT 1092
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TTGGGGATGAGCAGCTTGAAATAGAGTTGGATGCAGAAGATGGTCCACCTGAGCTGCTCT 1169
Query 1093 TCTCTCATGGAGGTCACAAGGCCAAAATATCAGACTTTGCCTGGAACAAGGACGAGCCTT 1152
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1170 TCTCTCATGGAGGCCACAAGGCCAAGATATCAGACTTTGCCTGGAACAAGGACGAGCCTT 1229
Query 1153 GGGTCATCTCAAGTGTAGCTGAAGACAACAGTCTTCAAGTCTGGCAAATGGCAGAAAGCA 1212
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1230 GGGTCATCTCAAGTGTAGCTGAAGACAACAGTCTTCAAGTCTGGCAAATGGCGGAAAGCA 1289
Query 1213 TCTACCGCGAAGATGATGAGGA--A---TGATGATGATGAAGGCAACCA 1256
|||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 1290 TCTACCGCGAAGATGACGAGGATGAGGATGATGATGATGAAGGCAACCA 1338
> AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin
family protein / WD-40 repeat family protein | chr2:7281462-7283646
REVERSE LENGTH=1464
Length=1464
Score = 1242 bits (672), Expect = 0.0
Identities = 1039/1214 (86%), Gaps = 34/1214 (3%)
Strand=Plus/Plus
Query 26 GGCGGAAGAGGGTAAAGATGAGCCAGGATTGGATCAGGTGGAGGAAGAGTTCTCTGTTTG 85
||| || || ||||| || ||| ||||| ||| |||||| |||||||| || ||||| ||
Sbjct 66 GGCAGATGAAGGTAAGGAGGAGACAGGAATGGGTCAGGTCGAGGAAGATTTTTCTGTGTG 125
Query 86 GAA-AAGGAACACACCATTTCTCTACGATCTTATGATCTCTCACCCACTCGAATGGCCAT 144
||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 126 GAAGAA-GAACACACCATTTCTCTACGATCTTTTGATCTCTCACCCACTCGAATGGCCAT 184
Query 145 CTCTAACTC-TCCATTGGGTCCCTTCGACGCCGATTCCGTACGCGA-AAGATC-CTTACT 201
|||| || | |||||||||| || |||||||| | ||| |||| | ||| | ||||||
Sbjct 185 CTCTCAC-CGTCCATTGGGTTCCATCGACGCCAAATCCTTACG-TAGCAGA-CTCTTACT 241
Query 202 TCGCCGTTCATAAGCTTATCCTAGGGACTCATACCTCCGGTGGTGCCCAGGATTTTCTAA 261
||| || || |||||||| || || |||||||| |||||| |||| || |||||||| |
Sbjct 242 TCGGTGTCCACAAGCTTATACTCGGTACTCATACTTCCGGTAGTGCTCAAGATTTTCTCA 301
Query 262 TGGTCGCCGATGTCGTTATTCCGACACCCGACGCTGAACCAGGGTTAGGTGGAAG--AGA 319
|||||||||| ||||||| |||||||| |||| ||||| ||| |||| || | | |
Sbjct 302 TGGTCGCCGACGTCGTTACCCCGACACCAAACGCAGAACCTGGGATAGGCGG-CGCTA-A 359
Query 320 TCAGGA-ACCTATCGTCCCTAAGGTGGAGATTAAGCAGAAGATACGTGTTGATGGAGAAG 378
|||||| ||| | | |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 360 TCAGGATCCCT-TTATTCCTAAGGTGGAGATTAGGCAGAGGATACGTGTTGATGGAGAAG 418
Query 379 TGAACAGAGCGCGGTGTATGCCTCAAAAGCCAACTCTTGTGGGTGCTAAA-ACAAGTGGC 437
||||||||||||||||||||||||||||||| || ||||||||||| ||| || |||||
Sbjct 419 TGAACAGAGCGCGGTGTATGCCTCAAAAGCCGACGCTTGTGGGTGC-AAAGACGAGTGGG 477
Query 438 TCTGAGGTGTTTTTATTTGATTACGCCAGAC-TCTCTGGAAAGCCCCAAACTAGTGAGTG 496
| |||||||||| | ||||||||||||| || | ||| |||| | ||||| ||||||||
Sbjct 478 TGTGAGGTGTTTCTGTTTGATTACGCCAAACATG-CTGCAAAGTCTCAAACGAGTGAGTG 536
Query 497 TGATCCTGATCTGAGGCTAATGGGACATGAACAAG-AAGGTTATGGATTGGCTTGGAGCT 555
||||||||||||||||||| |||||||||| |||| |||| ||||||||| ||||||| |
Sbjct 537 TGATCCTGATCTGAGGCTAGTGGGACATGA-CAAGGAAGGGTATGGATTGTCTTGGAG-T 594
Query 556 CCTTT-AAGGAGGGTTATCTTTTGAGTGGGTCACAGGATCAGA-GAATCTGCCTTTGGGA 613
||||| ||||| ||||||||||||||||| ||||||||||||| || |||| ||||||||
Sbjct 595 CCTTTCAAGGAAGGTTATCTTTTGAGTGGTTCACAGGATCAGAAGA-TCTGTCTTTGGGA 653
Query 614 TGTTTCAGCTACTGC-CAGTGATAAGGTTTTGAATCCAATGCATGTGTATGAGGGACATC 672
|||||||||||| | || ||||||||||||||| ||||| ||||||||||||||||
Sbjct 654 TGTTTCAGCTACACCGCAA-GATAAGGTTTTGAATGCAATGTTTGTGTATGAGGGACATG 712
Query 673 AAAG--CATCATTGAAGATGTAG-CATGGCACATGAAGAATGAGAATATATTCGGGTCTG 729
|||| | | || | |||||| | |||||||||||||||||||||| | || || ||||
Sbjct 713 AAAGTGC-T-ATCGCAGATGT-GTCATGGCACATGAAGAATGAGAACCTTTTTGGTTCTG 769
Query 730 CGGGTGATGATTGTCAATTGGTTATATGGGACTTACGGACAAACCAAATGCAACACCAAG 789
||||||| ||| | | |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 770 CGGGTGAGGATGGCCGATTGGTGATATGGGACACACGGACAAACCAAATGCAACACCAAG 829
Query 790 TCAAAGTTCACGAGAGAGAGATAAACTATCTTTCTTTCAATCCATTTAATGAATGGGTAC 849
| |||||||||||||||||| | |||||||| ||||||||||| || || |||||||||
Sbjct 830 TGAAAGTTCACGAGAGAGAGGTCAACTATCTATCTTTCAATCCGTTCAACGAATGGGTAT 889
Query 850 TAGCCACAGCTTCCTCAGACTCGACTGTCGCCTTGTTTGACCTTCGTAAGCTGACTGCGC 909
| |||||||||||||||||||| ||||| || ||||||||||| || || || | |||||
Sbjct 890 TGGCCACAGCTTCCTCAGACTCCACTGTTGCTTTGTTTGACCTCCGGAAACTTAATGCGC 949
Query 910 CATTACATGTCCTGAGCAGACACGAGGGAGAAGTTTTCCAAGTGGAGTGGGATCCGAACC 969
|||| |||||| ||||||| || |||||||| || |||||||||||||||||||| ||||
Sbjct 950 CATTGCATGTCATGAGCAGCCATGAGGGAGAGGTCTTCCAAGTGGAGTGGGATCCTAACC 1009
Query 970 ATGAAACAGTGCTTGCATCTTCTGGCGAGGACAGAAGACTCATGGTCTGGGATATCAATA 1029
|||||||||| || |||||||| || ||||||||||| || ||||||||||| | || |
Sbjct 1010 ATGAAACAGTACTCGCATCTTCAGGGGAGGACAGAAGGCTGATGGTCTGGGACCTGAACA 1069
Query 1030 GGGTCGGGGATGAGCAGCTTGAAATAGAGTTGGATGCAGAAGATGGTCCACCTGAGCTGC 1089
|||| || || ||||||||||| ||||||||||||||||||||||||||||| ||| | |
Sbjct 1070 GGGTTGGAGAAGAGCAGCTTGAGATAGAGTTGGATGCAGAAGATGGTCCACCAGAGTTAC 1129
Query 1090 TCTTCTCTCATGGAGGTCACAAGGCCAAAATATCAGACTTTGCCTGGAACAAGGACGAGC 1149
|||||||||| ||||| |||||||| || |||||||||||||| |||||||| ||||||
Sbjct 1130 TCTTCTCTCACGGAGGCCACAAGGCTAAGATATCAGACTTTGCTTGGAACAAAAACGAGC 1189
Query 1150 CTTGGGTCATCT-CAAGTGTAGCTGAAGACAACAGTCTTCAAGTCTGGCAAATGGCAGAA 1208
|||||||||| | |||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1190 CTTGGGTCAT-TGCAAGTGTAGCTGAAGACAACAGTCTTCAGGTGTGGCAGATGGCAGAA 1248
Query 1209 AGCATCTACCGCGA 1222
|||||||| |||||
Sbjct 1249 AGCATCTATCGCGA 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5