BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944394
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35040.1 | Symbols: bZIP19 | Basic-leucine zipper (bZIP) tra... 1286 0.0
> AT4G35040.1 | Symbols: bZIP19 | Basic-leucine zipper (bZIP) transcription
factor family protein | chr4:16680323-16682093
FORWARD LENGTH=1474
Length=1474
Score = 1286 bits (696), Expect = 0.0
Identities = 782/825 (95%), Gaps = 0/825 (0%)
Strand=Plus/Plus
Query 4 GTGGTTGGTGGGTTATAGTAATGGAAGACGGCGAGCTTGATTTCTCGAATCAGGAAGTGT 63
|||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 381 GTGGTTGGTGGGTTTTAGTAATGGAAGACGGTGAGCTTGATTTCTCCAATCAGGAAGTGT 440
Query 64 TTTCGAGTTCGGAGATGGGTGAATTACCACCTAGCAACTGTTCGATGGATAGTTTATTTG 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 441 TTTCGAGTTCGGAGATGGGTGAATTACCACCTAGCAATTGTTCGATGGATAGTTTCTTTG 500
Query 124 ATGGGCTTTGGATGGATACTAATGCTGCTTGTACCCACACTCACACCTGTAACCCCACGG 183
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 501 ATGGGCTTTTAATGGATACTAATGCTGCTTGTACCCACACTCACACCTGTAACCCCACTG 560
Query 184 GACCTGAGAGCACTCATACTCATACCTGTTTCCATGTCCACACCAAGATTCTCCCTGATG 243
|||| |||| |||||||||||| || || |||||||||||||||||||||||||| ||||
Sbjct 561 GACCAGAGAACACTCATACTCACACGTGCTTCCATGTCCACACCAAGATTCTCCCGGATG 620
Query 244 AGAGCGATGAAAGAGTTTCTACTGATGATACAGCTGAGTGTTGTGGGAAGAAGGGTGAAA 303
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 621 AGAGCGATGAAAAAGTTTCTACTGATGATACAGCTGAGTCTTGTGGGAAGAAGGGTGAAA 680
Query 304 AGAGACCTTTGGGAAACCGAGAAGCGGTTAGAAAGTATAGAGAGAAGAAGAAGGCTAAAG 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 681 AGAGACCTTTGGGAAACCGGGAAGCGGTTAGAAAGTATAGAGAGAAGAAGAAGGCTAAAG 740
Query 364 CCGCTTCGTTGGAGGATGAGGTTGCTAGGCTTAAGGCGGTGAATCAGCAGCTGGTGAAGA 423
| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 741 CTGCTTCTTTGGAGGATGAGGTTGCAAGGCTTAGGGCGGTGAATCAGCAGCTGGTGAAGA 800
Query 424 GGTTGCAAAATCAGGCTACCTTGGAAGATGAGGTCGCGAGGCTTAAGTGTTTGCTTGTGG 483
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 801 GGTTGCAAAATCAGGCTACCTTGGAAGCTGAGGTTTCGAGGCTTAAGTGTTTGCTTGTGG 860
Query 484 ATTTGAGAGGAAGGATAGATGGGGAGATTGGATCTTTTCCTTATCAGAAACCTATGACTG 543
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 861 ATTTGAGAGGAAGAATAGATGGAGAGATTGGATCTTTTCCTTATCAGAAACCTATGGCTG 920
Query 544 CAGATATTCCTTCTTTCTCGCACATGACGAATCCGTATAATGTACAATGTGATGATGAAG 603
|| |||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 921 CAAATATTCCTTCTTTCTCGCACATGATGAATCCTTGTAATGTACAATGTGATGATGAAG 980
Query 604 TTTATTGCCCTCAGAATGTATTTGGCGTGAATAGCCAAGAAGGTGCGTCAATCAATGACC 663
||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||
Sbjct 981 TTTATTGCCCTCAGAATGTGTTTGGAGTGAATAGCCAAGAAGGTGCCTCGATCAATGACC 1040
Query 664 AAGGGTTAAGTGATAGTGATTTTGATCAGCTACAATGCATGGCTAATCAGAACTTAAGTG 723
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1041 AAGGGTTAAGTGGTTGTGATTTTGATCAGCTACAATGCATGGCTAATCAGAACTTAAATG 1100
Query 724 GCAATGGGAACGGATCATTCAACAACGGCAATACATCTGTCTCGAATAAGAGAAAAGGTG 783
| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1101 GAAATGGAAACGGATCATTCAGCAACGTCAATACATCTGTCTCGAATAAGAGAAAAGGTG 1160
Query 784 GACATCGTGCATCAAGAGCAGTTTGAAGCATCATCAAGCTTGTAC 828
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 GGCATCGTGCATCAAGAGCAGTTTGAAGCATCATCAAGCTTGTAC 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5