BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944399
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34990.1 | Symbols: AtMYB32, MYB32 | myb domain protein 32 |... 1168 0.0
AT4G38620.1 | Symbols: ATMYB4, MYB4 | myb domain protein 4 | ch... 307 1e-82
AT1G63910.1 | Symbols: AtMYB103, MYB103 | myb domain protein 10... 76.8 3e-13
> AT4G34990.1 | Symbols: AtMYB32, MYB32 | myb domain protein 32
| chr4:16661329-16662367 REVERSE LENGTH=944
Length=944
Score = 1168 bits (632), Expect = 0.0
Identities = 796/870 (91%), Gaps = 32/870 (4%)
Strand=Plus/Plus
Query 1 CAAGAATCAGAAGAAGAAAGATGGGGAGGTCTCCTTGCTGCGAGAAAGACCACACGAACA 60
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 59 CAAGAATCAGAAGAAGAAAGATGGGAAGGTCTCCTTGCTGTGAGAAAGACCACACAAACA 118
Query 61 AAGGAGCTTGGACTAAGGAAGAAGACGATAAGCTCATCTCTTACATC-AAGTCTCACGGC 119
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 119 AAGGAGCTTGGACTAAGGAAGAAGACGATAAGCTCATCTCTTACATCAAAG-CTCACGGT 177
Query 120 GAAGGTTGTTGGCGTTCTCTTCCTAGATCCGCCGGTCTTCAACGTTGCGGCAAAAGCTGT 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 GAAGGTTGTTGGCGTTCTCTTCCTAGATCCGCCGGTCTTCAACGTTGCGGAAAAAGCTGT 237
Query 180 CGTCTCCGGTGGATTAACTATCTCCGGCCTGATCTCAAGAGGGGTAATTTCACCCTCGAA 239
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 238 CGTCTCCGATGGATTAACTATCTCCGACCTGATCTCAAGAGGGGTAACTTCACCCTCGAA 297
Query 240 GAAGATGATCTCATCATCAAACTCCATAGCCTTCTCGGCAACAAGTGGTCTCTTATCGCG 299
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 298 GAAGATGATCTCATCATCAAACTACATAGCCTTCTCGGTAACAAGTGGTCTCTTATTGCG 357
Query 300 ACGAGATTACCGGGAAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAG 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACGAGATTACCAGGAAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAG 417
Query 360 AGGAAGCTATTAAGAAGAGGGATTGATCCCGCGACTCATCGACCGATCAAC-A-A--AA- 414
|||||||||||||||| |||||||||||| |||||||||||||| |||||| | | ||
Sbjct 418 AGGAAGCTATTAAGAAAAGGGATTGATCCGGCGACTCATCGACCTATCAACGAGACCAAA 477
Query 415 -CTCCTCAAGATTCGTCTGATTCTAGTAAAACAGAGGACTCTCTTGTCAAGATTATCTCT 473
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 478 ACTTCTCAAGATTCGTCTGATTCTAGTAAAACAGAGGACCCTCTTGTCAAGATTCTCTCT 537
Query 474 TTCGGTCCTCAGTTGGAGAAAATAGCAAATTTTGGGGACGAGAGAACTGAAAAGGGACTC 533
|| ||||||||| ||||||||||||||||||| ||||||||||||| | ||
Sbjct 538 TTTGGTCCTCAGCTGGAGAAAATAGCAAATTTCGGGGACGAGAGAA-T----------TC 586
Query 534 ATGTGCCAAAAAGAGAGAGTTGAGTACTCTGTTGTCGAAGAAAGATGTGTAGACTTGAAT 593
| ||| ||||| |||||||||| ||||| |||||||||||| | |||||||||
Sbjct 587 A------AAA--GAGAG--TTGAGTACTCAGTTGTTGAAGAAAGATGTCTGGACTTGAAT 636
Query 594 CTGGAGCTTAGAATCAGTCCACCGTGGCAAGACCAGCTCCATGATGAGAAGAACCTGAGG 653
|| |||||||| ||||||||||| ||||||||| ||||||||||||||| |||||| |||
Sbjct 637 CTTGAGCTTAGGATCAGTCCACCATGGCAAGACAAGCTCCATGATGAGAGGAACCTAAGG 696
Query 654 TTTGGGAGAGTGAAGCATATGTGTACTGCGTGTCGTTTTGGATTTGGGAACGGCAAGGAG 713
||||||||||||||| ||| ||| | |||||| ||||||||||| |||||||||||||||
Sbjct 697 TTTGGGAGAGTGAAGTATAGGTGCAGTGCGTGCCGTTTTGGATTCGGGAACGGCAAGGAG 756
Query 714 TGTATATGTGATAATAAGAAATGTCAAACAGAGGACAGTAGTAGCAGCAGTTATTCTTCA 773
|||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TGTAGCTGTAATAATGTGAAATGTCAAACAGAGGACAGTAGTAGCAGCAGTTATTCTTCA 816
Query 774 ACCGACATTAGTAGTAGCATTGGTTATGACTTCTTGGGTCTAAACAA---TAGGGTTTTG 830
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 817 ACCGACATTAGTAGTAGCATTGGTTATGACTTCTTGGGTCTAAACAACACTAGGGTTTTG 876
Query 831 GATTTTAGCACTTTGGAAATGAAATGAAAT 860
||||||||||||||||||||||||||||||
Sbjct 877 GATTTTAGCACTTTGGAAATGAAATGAAAT 906
> AT4G38620.1 | Symbols: ATMYB4, MYB4 | myb domain protein 4 |
chr4:18053551-18054999 FORWARD LENGTH=1287
Length=1287
Score = 307 bits (166), Expect = 1e-82
Identities = 322/397 (81%), Gaps = 11/397 (3%)
Strand=Plus/Plus
Query 17 AAAG-ATGGGGAGGTCTCCTTGCTGCGAGAAAGAC-CACACGAACAAAGGAGCTTGGACT 74
|||| ||||| ||||| || ||||| ||||||| | ||||| ||||||||||| |||||
Sbjct 311 AAAGTATGGGAAGGTCACCGTGCTGTGAGAAAG-CTCACACAAACAAAGGAGCATGGACG 369
Query 75 AAGGAAGAAGACGATAAGCTCATCTCTTACA-TCAAGTCTCACGGCGAAGGTTGTTGGCG 133
|| ||||| ||||| | |||| || | |||| | ||| |||| || ||||| || ||| |
Sbjct 370 AAAGAAGAGGACGAGAGGCTCGTCGCCTACATTAAAG-CTCATGGAGAAGGCTGCTGGAG 428
Query 134 TTCTCTTCCTAGATCCGCCGGTCTTCAACGTTGCGGCAAAAGCTGTCGTCTCCGGTGGAT 193
||||| || | | ||||||| |||| || || ||||| ||||| ||||||||||||||
Sbjct 429 ATCTCTCCCCAAAGCCGCCGGACTTCTTCGCTGTGGCAAGAGCTGCCGTCTCCGGTGGAT 488
Query 194 TAACTATCTCCGGCCTGATCTCAAGAGGGGTAATTTCACCCTCGAAGAAGATGATCTCAT 253
||||||||||||||||| || ||| | || || |||||| |||||||| || |||||
Sbjct 489 CAACTATCTCCGGCCTGACCTTAAGCGTGGAAACTTCACCGAGGAAGAAGACGAACTCAT 548
Query 254 CATCAAACTCCATAGCCTTCTCGGCAACAAGTGGTCTCTTATCG-CGACGAGATTACCGG 312
|||||| |||||||||||||| |||||||| ||||| ||||| | || |||||||||||
Sbjct 549 CATCAAGCTCCATAGCCTTCTTGGCAACAAATGGTCGCTTATTGCCG-GGAGATTACCGG 607
Query 313 GAAGAACAGATAACGAGATTAAGAATTACTGGAACACACATGTTAAGAGGAA-GCT-ATT 370
||||||||||||||||||| ||||| || |||||||| ||| | | || ||| ||| ||
Sbjct 608 GAAGAACAGATAACGAGATAAAGAACTATTGGAACACGCATAT-ACGAAGAAAGCTTATA 666
Query 371 AAGAAGAGGGATTGATCCCGCGACTCATCGACCGATC 407
|| | ||||||||||||| ||| |||| |||| |||
Sbjct 667 AACA-GAGGGATTGATCCAACGAGTCATAGACCAATC 702
> AT1G63910.1 | Symbols: AtMYB103, MYB103 | myb domain protein
103 | chr1:23719783-23721774 REVERSE LENGTH=1447
Length=1447
Score = 76.8 bits (41), Expect = 3e-13
Identities = 148/198 (75%), Gaps = 14/198 (7%)
Strand=Plus/Plus
Query 156 CTTCAACGTTGCGGCAAAAGCTGTCG-TCTCCGGTGGATTAACTATCTCCGGCCTGATCT 214
|||||| | || || ||||| ||| | | | || ||||| |||||||| || |||||| |
Sbjct 285 CTTCAAAGATGTGGAAAAAGTTGTAGAT-TGCGATGGATAAACTATCTTCGACCTGATAT 343
Query 215 CAAGAGGGGTAA-TTTCAC-CCTCGAAGAAGATG--ATCTCATCATCAA-ACTCCATAGC 269
|| ||| || || ||| | || |||||||| | || | ||||| || || ||| |
Sbjct 344 CAGGAGAGG-AAGGTTCTCTCC-AGAAGAAGA-GAAAT-TGATCAT-AAGCCTTCATGGA 398
Query 270 CTTCTCGGCAACAAGTGGTCTCTTATCGCGACGAGA-TTACCGGGAAGAACAGATAACGA 328
|| | || |||| |||| ||| ||| || | | | |||||||||||||||||||||||
Sbjct 399 GTTGTGGGAAACAGGTGGGCTCATATAGCTA-GTCATTTACCGGGAAGAACAGATAACGA 457
Query 329 GATTAAGAATTACTGGAA 346
|||||| || || |||||
Sbjct 458 GATTAAAAACTATTGGAA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42799493244
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5