BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944404
Length=2038
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34940.1 | Symbols: ARO1 | armadillo repeat only 1 | chr4:16... 3258 0.0
> AT4G34940.1 | Symbols: ARO1 | armadillo repeat only 1 | chr4:16639598-16641950
FORWARD LENGTH=2353
Length=2353
Score = 3258 bits (1764), Expect = 0.0
Identities = 1949/2040 (96%), Gaps = 6/2040 (0%)
Strand=Plus/Plus
Query 1 GTTTCTTGACTGTTGTTTCTCTCATGGCGGATATCGTGAAACAGATCTTAGTAAGACCGA 60
||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 142 GTTTCTTGATTGTTG-TT-TCTCATGGCGGATATTGTGAAACAGATCTTAGTAAGACCGA 199
Query 61 TTCAATTAGCGGATCAGATAACTAAAGCGTCAGACGAAGCTTACTCATTCCGTCAAGAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TTCAATTAGCGGATCAGATAACTAAAGCGTCAGACGAAGCTTACTCATTCCGTCAAGAAT 259
Query 121 GTCTAGAGGTCAAAGCCAAAACGGAAAAGCTCGCCGGTCTCCTCCGTCAAGCGGCGCGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GTCTAGAGGTCAAAGCCAAAACGGAAAAGCTCGCCGGTCTCCTCCGTCAAGCGGCGCGTG 319
Query 181 CAAGCAACGATCTCTACGAACGTCCCACGCGCCGTATCATCGACGATACAGAGCAAGTCC 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 320 CAAGCAACGATCTCTACGAACGTCCCACTCGCCGTATCATCGACGATACAGAGCAAGTCC 379
Query 241 TCTTCAAAGCATTAGCCCTCGTCGAAAAATGCCGCGCCACGGGACTGATGAAACGTGTTT 300
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 380 TCTTCAAAGCCCTAGCCCTCGTAGAAAAATGCCGCGCCACGGGACTGATGAAACGTGTTT 439
Query 301 TCACCATTATCCCCGCGGCTGCGTTTAGGAAAATCACGATGCAGTTAGAGAATTCAATCG 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCACCATTATTCCCGCGGCTGCGTTTAGGAAAATCACGATGCAGTTAGAGAATTCAATCG 499
Query 361 GAGACGTCTCTTGGCTTCTCCGTGTCTCTGCTTCAGGAGATGATCGTGACGATGAGTATT 420
||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 500 GAGACGTTTCTTGGCTCCTACGTGTCTCTGCTTCAGGCGATGACCGTGACGATGAGTATT 559
Query 421 TAGGTCTCCCTCCCATCGCTGCCAACGAACCAATCCTCTGTTTGATTTGGGAACAAGTTG 480
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 560 TAGGTCTCCCTCCGATCGCTGCAAACGAACCAATCCTCTGTTTGATTTGGGAACAAGTTG 619
Query 481 CAATTCTGTTCACAGGCTCTCTCGATGATCGATCCGATGCAGCGGCTTCGCTCGTGTCGC 540
| || ||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 620 CGATACTGTTCACAGGCTCTCTCGATGATCGATCTGATGCAGCGGCTTCCCTGGTGTCGC 679
Query 541 TTGCACGTGACAATGATCGATACGGGAGGTTGATTATTGAAGAAGGTGGGGTTCCTCCGT 600
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 680 TTGCACGTGACAATGATCGATACGGGAGGTTGATTATTGAAGAAGGTGGTGTACCTTCGT 739
Query 601 TATTGAAACTTGCTAAAGAAGGTAAAATGGAAGGTCAAGAAAACGCGGCTCGAGCCATTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TATTGAAACTTGCTAAAGAAGGTAAAATGGAAGGTCAAGAAAACGCGGCTCGAGCCATTG 799
Query 661 GGTTATTAGGACGTGATCCAGAGAGTGTTGAACAGATTGTGAACGCAGGTGTGTGTCAAG 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GGTTATTAGGACGAGATCCAGAGAGTGTTGAACAGATTGTGAACGCAGGTGTGTGTCAAG 859
Query 721 TGTTTGCAAAGATTCTTAAAGAAGGTCATATGAAAGTTCAAACTGTTGTTGCTTGGGCTG 780
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 TGTTTGCGAAGATTCTTAAAGAAGGTCATATGAAAGTTCAAACTGTTGTTGCTTGGGCTG 919
Query 781 TTTCTGAATTAGCTTCAAATCATCCAAAATGTCAAGACCATTTTGCTCAGAACAACATCA 840
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 920 TTTCTGAATTAGCCTCTAATCATCCTAAATGTCAAGACCATTTTGCTCAGAACAACATCA 979
Query 841 TTCGTTTCCTTGTAAGCCATTTAGCTTTTGAGACGGTTCAAGAACATAGCAAATACGCTA 900
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TCCGTTTCCTCGTGAGCCATTTAGCTTTTGAGACGGTTCAAGAACATAGCAAATACGCTA 1039
Query 901 TCGTGAGTAACAAGCAGACATTGTCTTCGATCCATACGGTTGTGATGGCAAGTAATACGA 960
|||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1040 TCGTGAGTAACAAGCAAACATTGTCGTCGATCCATACGGTTGTTATGGCGAGTAATACGA 1099
Query 961 ATCCGACGGGTAAGAAGGAGAATAGCGAGCAAGACGAGACAAAAAGCAATATTTCACATC 1020
||||| ||| |||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 1100 ATCCGGCGGATAAGAAGGAGAACAATGAGCAAGATGAGACAAAAAGCAATATTTCACATC 1159
Query 1021 CTATGAGTAATCAAACACCGAGCCAGATGCATAGCTTGATTACAAACACATTAGCAATGA 1080
|| |||||||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 1160 CTTTGAGTAATCAAACACCGAGCCAGATGCATAGCTTGATTGCTAACACATTGGCAATGA 1219
Query 1081 AGGGTTCGGGTCCGAGTTCAGGTTCGGGTTCAGGTTCGGGTTCGGGAACTAACAAGAATC 1140
||||||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1220 AGGGTTCAGGTCCCAGTTCAGGTTCAGGCTCAGGTTCAGGTTCGGGAACTAACAAGAATC 1279
Query 1141 AGATAAAACAGAGCAACCAACAGCACCAGAATCATACCAAGGGTGGTTCAAACCCGAGAG 1200
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1280 AGATAAAACAGAGCAATCAACAGCACCAGAATCATACCAAGGGTGGTTCAAACCCTAGAG 1339
Query 1201 GGAACAACCCGACACATGTTTCTTTAATGGGGACAAGCATAAAAGGAAGAGAGTTTGAGG 1260
||||||| || || |||||||| |||||||| |||||||| ||||||||||||| |||||
Sbjct 1340 GGAACAATCCTACGCATGTTTCATTAATGGGCACAAGCATTAAAGGAAGAGAGTATGAGG 1399
Query 1261 ATCCAGCTACTAAAGCTCAGATGAAGGCAATGGCTGCAAGAGCACTGTGGCAACTCTCAA 1320
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1400 ATCCAGCTACTAAAGCTCAGATGAAAGCAATGGCTGCAAGAGCATTGTGGCAACTCTCAA 1459
Query 1321 GAGGGAATCTCCAAATATGTAGAAGCATAACAGAGTCAAGAGCATTGCTCTGTTTTGCGG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1460 GAGGGAATCTCCAAATATGTAGAAGCATAACAGAGTCAAGAGCATTGCTCTGTTTCGCGG 1519
Query 1381 TTCTGTTAGAGAAAGGAGACGATGAAGTCAAGTCATATTCCGCTTTGGCAATGATGGAGA 1440
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1520 TTCTGTTAGAGAAAGGAGACGATGAAGTCAAGTCATATTCAGCTTTGGCAATGATGGAAA 1579
Query 1441 TCACAGATGTGGCTGAACAGTATCCAGAACTTAGACGTTCAGC-TTTCAAACCAACCTCT 1499
|||||||||| || || || ||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 1580 TCACAGATGTAGCAGAGCAATATCCAGAACTGAGACGTTCAGCCTTT-AAACCAACCTCT 1638
Query 1500 CCTGCTGCAAAAGCTGTAGTTGAACAGTTACTTAAGGTGATCGAAAACGAAATAAC-GGA 1558
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 1639 CCTGCTGCAAAAGCTGTAGTAGAACAGTTACTTAAGGTGATCGAAAACGAAATA-CTGGA 1697
Query 1559 CCTTCTAATCCCGTGTATCAAATCAATCGGTAGTCTTTCAAGAACATTCCGTGCAACGGA 1618
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1698 CCTACTAATCCCGTGTATCAAATCAATCGGTAGTCTTTCAAGAACGTTCCGTGCAACGGA 1757
Query 1619 AACAAGGATCATTGGACCACTTGTGAAGCTTCTAGATGAAAGAGAAGCAGAGGTTGCAAT 1678
||| ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct 1758 AACTAGGATCATTGGACCACTCGTGAAGCTTCTTGATGAAAGAGAAGCAGAGATTGCAAT 1817
Query 1679 GGAAGCCGCAGTAGCGCTTATCAAATTCTCATGTACCGATAATTTCCTTCGCGATAACCA 1738
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1818 GGAAGCCGCAGTAGCGCTTATCAAATTCTCATGTACCGAGAATTTCCTTCGCGATAACCA 1877
Query 1739 CTCTAAAGCGATTATAGCAGCAGGAGGTGCAAAGCATTTGATTCAATTGGTCTACTTTGG 1798
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct 1878 CTCTAAAGCGATTATAGCAGCTGGAGGTGCAAAGCATTTGATTCAACTGGTATACTTTGG 1937
Query 1799 AGAACAAATGGTTCAAGTCCCGGCTTTGATGCTACTTTGTTATATAGCTTTGAATGTACC 1858
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1938 AGAACAAATGGTTCAAGTCCCGGCTTTGATGCTACTTTGTTATATCGCTTTGAATGTACC 1997
Query 1859 GGACAGTGAGGCTTTAGCTCAAGAAGAGGTTCTTGTAGTGCTTGAATGGTCGACAAAGCA 1918
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1998 GGACAGTGAGACTTTAGCTCAAGAAGAGGTTCTTGTAGTACTTGAATGGTCGACAAAGCA 2057
Query 1919 AGCTCATTTGGTGGAAGCACCGACGATTGACGAGATTTTACCAGAAGCAAAGAGTAGATT 1978
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2058 AGCTCATTTGGTTGAAGCACCGACGATTGATGAGATTTTACCAGAAGCAAAGAGTAGATT 2117
Query 1979 GGAGCTTTACCAATCTAGAGGGTCAAGAGGATTTCATTGATATATGACAAAGCTTCACTC 2038
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2118 GGAGCTTTACCAATCTAGAGGGTCAAGAGGATTTCATTGATATATGACGAAGCTTCACTC 2177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101003496540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5