BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944405
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34930.1 | Symbols: | PLC-like phosphodiesterases superfami... 1349 0.0
AT4G34920.1 | Symbols: | PLC-like phosphodiesterases superfami... 881 0.0
> AT4G34930.1 | Symbols: | PLC-like phosphodiesterases superfamily
protein | chr4:16637322-16638872 FORWARD LENGTH=1551
Length=1551
Score = 1349 bits (730), Expect = 0.0
Identities = 938/1039 (90%), Gaps = 12/1039 (1%)
Strand=Plus/Plus
Query 53 GGTATCTTTTGCCAACGATTCTGCGAGAACTGTTGCAGAAGAAGTGATAAATCCAGCGGT 112
||| |||||||| ||||| |||||||||||||||| |||| ||||| |||||||| ||||
Sbjct 376 GGTCTCTTTTGCAAACGACTCTGCGAGAACTGTTGTAGAAAAAGTGCTAAATCCAACGGT 435
Query 113 ATCGATCATCCAAAACCAGCTCCAGCGGCCACGGGACGTCCTTGAGCAACAACAAATCCT 172
|||| ||||| | | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 436 ATCGTTCATCGATAGCCAGCTCCAGCGGCCACGGGACGTCCTTGTGCAACAACAAATCCT 495
Query 173 AGACAATCTCCAAGAATCTAATGGTTCGCATTTCCCTGGGGATGACTACCACTCGCCCGA 232
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||
Sbjct 496 AGACAATCTCCAAGAATCGAATGGTTCGAATTTCCCTGGGGATGACTACCACTCGCCTGA 555
Query 233 TCGGAAGAACTGGATGGCGCATCTCTCTGTGGATAAGCTAACCCTTAACAAGATCGTGTG 292
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 556 CCGGAAGAACTGGATGGCCCATCTCTCTGTGGATAAACTAACCCTTAACAAGATCGTGTG 615
Query 293 GCCCGGAACGCACGACTCAGCCACCAACGGAATCGGGGACCCTGTGTTCACTCGTTGGTT 352
||| ||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct 616 GCCAGGAACTCACGACTCAGCCACCAACGGAATTGGGGACCCTTTGGTCACTCGTTGGTT 675
Query 353 GGGTGAATGCCAAACGCTTTCCATCTTTGACCAGCTAGTTCTTGGAACACGTGTCCTCGA 412
||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 676 GGGTGAATGTCAAACGCTCTCCATCTTCGACCAGCTAGTTCTTGGCACACGTGTCCTCGA 735
Query 413 TATCCGTATACAGGAAGACCGCAGTGTCTGCCATGGAGCTCTGTCGTCGTACAACGTTGA 472
||||||| | || || || || ||||||||||||||||||| || ||||||||||||||
Sbjct 736 TATCCGTTTCCAAGAGGATCGTTGTGTCTGCCATGGAGCTCTTTCTTCGTACAACGTTGA 795
Query 473 TGTCGTCCTCAATGACGTCGTTAGATTTTTGTCGGAGACCCAATCTGAGATCATAATCCT 532
||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||| ||
Sbjct 796 TGTCGTCCTCAATGACGTCATCAGATTTGTGTCCGAGACCCAATCTGAGATCATAAT-CT 854
Query 533 T-GAGATAAGGACCGAGTTTAAAAAGAAAGACCCTATGGGATTCGAGGCTTACTTGGCAG 591
| |||||||||||||||||| ||||||||||||| | | ||||||| ||||||||| |
Sbjct 855 TGGAGATAAGGACCGAGTTTGGAAAGAAAGACCCTTTTGAATTCGAGACTTACTTGGTTG 914
Query 592 ACAAGA-TAGGTCAATTCTTGATACATCAAGACGATAACTTGTTCGACAAACCGATATCA 650
| || | |||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 915 ATAA-ATTAGGTCAATTCTTGATACATCAAGACGATAACTTGTTCAACAAGCCGGTATCA 973
Query 651 GAGATTTTGCCGAAAAGGGTTATTTGCATCTGGAAACCAAGAGACTCTCAGAAGCCGCGC 710
|||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||
Sbjct 974 GAGATTTTGCCGAAAAGGGTTATTTGCATCTGGAAACCTAGAGAATCTCCGAAGCCGAGC 1033
Query 711 CGTGGTGGACTTCTCTGGAACTCAGATTATCTAAAAGATAATTGGATCGATACAGATCTT 770
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1034 CGTGGTGGAATTCTCTGGAACTCAGATTATCTAAAAGATAATTGGATCGATACGGATCTT 1093
Query 771 CCATGGACGAAATTTCAGAGCAATTTGAAGCATCTGAGCGAACAGCAACCAATATCTTAT 830
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| |
Sbjct 1094 CCATGGACGAAATTTCAGAGCAATTTGAAGCATCTGAGTGAGCAGCAACCGATATCTTCT 1153
Query 831 AG-AAGATTCTTTTACCGGGTTGAGAACACGGTTACTCCGCAAGCAGATAATCTGGTTGT 889
|| || |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1154 AGGAA-ATTCTTCTACCGGGTTGAGAACACGGTTACGCCGCAAGCAGATAATCCGGTTGT 1212
Query 890 -TGGGGTTAAACCGGTGACTGATCGAATCCGAAAACACGCAAGGCTATTTATATCTCAGT 948
|||| |||||| ||| |||||||| ||| |||||||||| ||||| |||||||||||||
Sbjct 1213 GTGGG-TTAAACAGGTTACTGATCGGATCAGAAAACACGCTAGGCTTTTTATATCTCAGT 1271
Query 949 GTGTTTCCAGGGGATGTGGAGACAAGTTGCAAATTCTGTCGACTGATTTCATTGAAGGAG 1008
||| ||||| ||||| |||||| ||||| || ||| |||| |||||||||||||||||||
Sbjct 1272 GTGCTTCCAAGGGATATGGAGATAAGTTACAGATTTTGTCCACTGATTTCATTGAAGGAG 1331
Query 1009 ATTTCGTGGATGCCTGCGTTGGACTCACTCATGCGAGAATCGAAGGGAAAGTTTAACA-G 1067
|||| || ||||||||||| ||||||||||| || ||||| ||||||| ||||| | | |
Sbjct 1332 ATTTTGTCGATGCCTGCGTCGGACTCACTCACGCAAGAAT-GAAGGGACAGTTTGATAAG 1390
Query 1068 ATATC-CGA-GTTTGACAA 1084
||||| | | ||| |||||
Sbjct 1391 ATATCTCCAAGTTAGACAA 1409
> AT4G34920.1 | Symbols: | PLC-like phosphodiesterases superfamily
protein | chr4:16635684-16636975 FORWARD LENGTH=1292
Length=1292
Score = 881 bits (477), Expect = 0.0
Identities = 770/910 (85%), Gaps = 26/910 (3%)
Strand=Plus/Plus
Query 166 AAATCCTAGA-CAATCTCCAAGAATCTAATGGTTCGCATTTCCCTGGGGATGACTACCAC 224
||| |||| | ||||||| || ||||| | ||||| || |||||||| ||||||||||
Sbjct 120 AAACCCTA-ACCAATCTCGAAAAATCTGACGGTTCACAATTCCCTGGCGATGACTACC-G 177
Query 225 T-CGCCCGATCGGAAGAACTGGATGGC-GCATCTCT-CTG-TGGATAAGCTAACCCTTAA 280
| || |||||||||| ||||||||||| | ||| | | | |||| || ||||| || ||
Sbjct 178 TCCGTCCGATCGGAAAAACTGGATGGCTG-GTCT-TAC-GTTGGAGAAACTAACTCTAAA 234
Query 281 CAAGATCGTGTGGCCCGGAACGCACGACTCAGCCACCAACGGA-ATCGGGGA-CCCTGTG 338
||||||||||||||| |||||||| || |||||||||||| || ||| || | ||| ||
Sbjct 235 CAAGATCGTGTGGCCAGGAACGCATGATTCAGCCACCAAC-GATATC-GGAATACCTCTG 292
Query 339 TTCACTCGTTGGTTGGGTGAATGCCAAACGCTTTCCATCTTTGACCAGCTAGTTCTTGGA 398
|| ||||| || | |||||||||| |||| || |||| || ||||| || || ||
Sbjct 293 ATCTCTCGTCCTTTAGCTGAATGCCAATCGCTCTCTATCTACGAGCAGCTCGTCCTCGGG 352
Query 399 ACACGTGTCCTCGATATCCGTATACAGGAAGACCG-CAGTGTCTGCCA-TGGAGCTCTGT 456
||||||||||||||||||||| | || || || || || ||||||| ||| ||||
Sbjct 353 ACACGTGTCCTCGATATCCGTGTGCAAGAGGATCGCCA-AATCTGCCACGGGA-TTCTGA 410
Query 457 CGTCGTAC-AACGTTGATGTCGTCCTCAATGACGTCGTTAGATTTTTGTCGGAGACCCAA 515
|||| ||| || ||||||| ||| | ||||||| | ||||| ||||||||||| ||
Sbjct 411 CGTCATACGAA-ATTGATGTTGTCATTGATGACGTTATCAGATTCTTGTCGGAGACTCAC 469
Query 516 TCTGAGATCATAATCCTTGAGATAAGGACCGAGTTTAAAAAGAAAGACCCTATGGGATTC 575
|| ||||| ||||||| ||||||||||| |||||| | | ||||| ||| ||| |||
Sbjct 470 TCGGAGATTGTAATCCTGGAGATAAGGACTGAGTTTGGACACAAAGATCCTCCGGGGTTC 529
Query 576 GAGGCTTACTTGGCAGACAAGATAGGTCAATTCTTGATACATCAAGACGATAACTTGTTC 635
||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||
Sbjct 530 GAGACTTACTTGGCAGACAAGTTAGGTCAATTCTTGATACATCAAGATGATAGCTTGTTC 589
Query 636 GACAAACCGATATCAGAGATTTTGCCGAAAAGGGTTATTTGCATCTGGAAACCAAGAGAC 695
|||| ||| |||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 590 AACAAGCCGGTATCAGAGATTTTGCCGAAAAGGGTTATATGCATCTGGAAACCTAGAGAG 649
Query 696 TCT-CAGAAGCCGCGCCGTGGTGGACTTCTCTGGAACTCAGATTATCTAAAAGATAATTG 754
||| || |||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 650 TCTCCA-AAGCCGAGCCGTGGTGGAATTCTCTGGAACTCAGATTATCTAAAAGATAATTG 708
Query 755 GATCGATACAGATCTTCCATGGACGAAATTTCAGAGCAATTTGAAGCATCTGAGCGAACA 814
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 709 GATCGATACGGATCTTCCATGGACGAAATTTCAGAGCAATTTGAAGCATCTGAGTGAGCA 768
Query 815 GCAACCAATATCTTATAGAAGATTCTTTTACCGGGTTGAGAACACGGTTACTCCGCAAGC 874
||| || | ||||| ||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 769 GCAGCCGACATCTTCTAGAAAATTCTTTTACCGGGTTGAGAACACGGTCACGCCGCAAGC 828
Query 875 AGATAATCTGGTTGT-TGGGGTTAAACCGGTGACTGATCGAATCCGAAAACACGCAAGGC 933
|||||||| |||||| |||| ||||||||||||||||||| |||||||||||||| || |
Sbjct 829 AGATAATCCGGTTGTGTGGG-TTAAACCGGTGACTGATCGGATCCGAAAACACGCCAGAC 887
Query 934 TATTTATATCTCAGTGTGTTTCCAGGGGATGTGGAGACAAGTTGCAAATTCTGTCGACTG 993
||||||| |||||||||||||||| |||||||||||| |||||||| ||| |||| ||||
Sbjct 888 TATTTATTTCTCAGTGTGTTTCCAAGGGATGTGGAGATAAGTTGCAGATTTTGTCCACTG 947
Query 994 ATTTCATTGAAGGAGATTTCGTGGATGCCTGCGTTGGACTCACTCATGCGAGAATCGAAG 1053
||||||| |||||||||||||| |||||||| || || || ||||| || ||||||||||
Sbjct 948 ATTTCATCGAAGGAGATTTCGTTGATGCCTGTGTCGGCCTTACTCACGCAAGAATCGAAG 1007
Query 1054 GGAAAG-TTT 1062
| |||| |||
Sbjct 1008 G-AAAGGTTT 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5