BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944416

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34810.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   544    3e-154


> AT4G34810.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr4:16599104-16599421 FORWARD LENGTH=318
Length=318

 Score =  544 bits (294),  Expect = 3e-154
 Identities = 310/318 (97%), Gaps = 0/318 (0%)
 Strand=Plus/Plus

Query  25   ATGGGTCTAAGCCGTTTTGCAATTTCAAATGCAACAAAGCAGATATTGAAGCTAAACTCA  84
            |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGTCTGAGCCGTTTTGCGATATCAAATGCAACAAAGCAGATATTGAAGCTAAACTCA  60

Query  85   TTGGCAAACAGAAACCGAACATCATCATCATCATCGGATCATGTCCCTAAAGGACACGTA  144
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTGGCAAACAGAAACCGAACCTCATCATCATCATCGGATCATGTCCCTAAAGGACACGTA  120

Query  145  GCAGTTTACGTAGGAGAACAGATTGAGGTGGAGAAGAAGAGATTCGTGGTTCCAATATCG  204
            |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  121  GCAGTTTATGTAGGAGAACAGATTGAGATGGAGAAGAAGAGATTCGTGGTTCCAATATCG  180

Query  205  TTTCTGAATCATCCTTCCTTCAAAGAGTTTCTTAGTCGAGCAGAGGAAGAGTTTGGATTC  264
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  181  TTTCTGAATCATCCTTCCTTCAAAGAGTTCCTTAGTCGAGCAGAGGAAGAGTTTGGATTC  240

Query  265  AATCATCCAATGGGAGGCTTGACCATTCCTTGTAGAGAAGAAGTTTTTCTTGATCTCATC  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  AATCATCCAATGGGAGGCTTGACCATTCCTTGTAGAGAAGAAGTTTTTCTTGATCTCATC  300

Query  325  GCTTCTCGGTTACATTAA  342
            |||||||||||||| |||
Sbjct  301  GCTTCTCGGTTACAATAA  318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16990499162


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5