BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944417

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34800.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   472    1e-132


> AT4G34800.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr4:16596860-16597144 FORWARD LENGTH=285
Length=285

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 275/285 (96%), Gaps = 0/285 (0%)
 Strand=Plus/Plus

Query  21   ATGGCGATTAGATTGTCGCGTGTTATCAACTCTAAACAGTCCCAAAAACAGCAATCTCGA  80
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGATTAGATTGTCGCGTGTGATCAACTCTAAACAGTCCCAAAAACAGCAATCTCGA  60

Query  81   GTCCCAAAAGGACATGTTGCGGTTTATGTAGGAGAAGAGATGGAGAACAAGAAGAGGTTC  140
            ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct  61   GTCCCGAAAGGACATGTTGCGGTTTATGTCGGAGAAGAGATGGAGAGCAAGAAGAGATTC  120

Query  141  GTGGTTCCGATTTCGTATTTGAACCACCCTTCGTTTCAAGGTTTGCTTAGTCGAGCAGAG  200
            |||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct  121  GTGGTTCCGATTTCGTATTTGAACCATCCTTCATTTCAAGGTTTGCTTAGTAGAGCAGAG  180

Query  201  GAAGAGTTTGGTTTCAATCATCCAATTGGTGGATTAACGATTCCATGCAGAGAAGAAACA  260
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  181  GAAGAGTTTGGTTTCAATCATCCAATCGGTGGATTAACGATTCCATGCAGAGAAGAAACA  240

Query  261  TTTGTTGGTCTCTTGAATTCTTATGGTTGTATTGTTTCAACTTGA  305
            ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  241  TTTGTTGGTCTTTTGAATTCTTATGGTTGTATTGTTTCAACTTGA  285



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15130592449


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5