BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944418

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34790.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   523    4e-148


> AT4G34790.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr4:16594469-16595153 FORWARD LENGTH=685
Length=685

 Score =  523 bits (283),  Expect = 4e-148
 Identities = 338/363 (93%), Gaps = 9/363 (2%)
 Strand=Plus/Plus

Query  1    GTTGCAAATATAAAGAAGAAG--ATGGGTTTAATGCGGTCGATGCTTCCAAATGCAAAGC  58
            ||| |||| ||||| ||||||  |||||||||||| ||||||||||||||||||||||||
Sbjct  48   GTTCCAAACATAAATAAGAAGACATGGGTTTAATGAGGTCGATGCTTCCAAATGCAAAGC  107

Query  59   AAATCTTCAAATCACAATCTATGAGAAACAAAAACGGATCATCATCATCATC--CA-CAA  115
            ||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||  || |||
Sbjct  108  AAATCTTCAAATCACAATCTATGAGGAACAAGAACGGATCATCCTCACCATCAACAACAA  167

Query  116  CAAC---TTCAGGGCTTGTTCCGAAAGGTCACGTAGCGGTTTACGTGGGAGAACAAATGG  172
            ||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  168  CAACAACTTCAGGGCTTGTTCCGAAAGGTCACGTAGCGGTTTACGTTGGAGAACAAATGG  227

Query  173  AGAAAAAGAGGTTTGTGGTTCCAATATCATACTTGAACCATCCTTTGTTCCGAGAATTTC  232
            |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  228  AGAAGAAGAGGTTTGTGGTTCCAATATCATACTTGAACCATCCTTTGTTCAGAGAATTTC  287

Query  233  TTAATCGCGCTGAGGAAGAGTGTGGATTTCATCACTCCATGGGTGGCTTGACGATACCTT  292
            ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct  288  TTAATCGCGCTGAGGAAGAATGCGGATTTCATCACTCTATGGGTGGCTTGACGATACCTT  347

Query  293  GTAGAGAAGAGTCGTTTCTTCATCTCATTACTTCTCATCAGCTGCATTGAGGAACGCATG  352
            || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  348  GTCGAGAAGAGTCGTTTCTTTATCTCATTACTTCTCATCAGCTGCATTGAGGAACGCAT-  406

Query  353  TAA  355
            |||
Sbjct  407  TAA  409



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16990499162


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5