BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944419

Length=365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34780.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   483    6e-136


> AT4G34780.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr4:16592397-16592717 REVERSE LENGTH=321
Length=321

 Score =  483 bits (261),  Expect = 6e-136
 Identities = 302/322 (94%), Gaps = 2/322 (1%)
 Strand=Plus/Plus

Query  24   ATGATTCAATTCAAGACTATAGTTATTCAAGTCAAGAGAGTAGTCGATAAAAAGATATCG  83
            ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  1    ATGATTCGATTCAAGACTATAGTTTTTCAAGTCAAGAGAGTACTCGATAAAAAGATATCG  60

Query  84   CGTTTAAGACACATAATCAACGTACGAAAGGGTCACTTTGCGGTATATGTTGGTGTAGAC  143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  61   CGTTTAAGACACATAATCAACGTACGAAAGGGTCACTTTGCGGTATATGTTGGAGAAGAC  120

Query  144  GAGGAAG-AGACGAAGAGATTTGTGGTTCCAATATCTTACTTAAACCATCCTTTGTTCCA  202
            ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GAG-ATGGAGACGAAGAGATTTGTGGTTCCAATATCTTACTTAAACCATCCTTTGTTCCA  179

Query  203  AGCCTTGTTGCTTCAAGCCGAAGATGAGTTCGGCACAGATCATAAGAGGAAATCCCTCAC  262
            ||||||||||| | ||||||||||||| || |||||||||||| |||||| || ||||||
Sbjct  180  AGCCTTGTTGCGTAAAGCCGAAGATGAATTTGGCACAGATCATCAGAGGACATACCTCAC  239

Query  263  AATCCCTTGTGCTAAAGATGTCTTTATTGACATCACTTCTCGTCTGAAGCGTAGTAAATT  322
            ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct  240  AATTCCTTGTGCTAAAGATGTCTTTCTTGACATCACTTCTCGTCTGAAGCGTAATAAATT  299

Query  323  TATTAGAACTGAAAGTAATTAA  344
            |||||| ||||||| |||||||
Sbjct  300  TATTAGTACTGAAATTAATTAA  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17141302409


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5