BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944429

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34700.1 | Symbols: CIB22, AtCIB22 | LYR family of Fe/S clus...   628    8e-180


> AT4G34700.1 | Symbols: CIB22, AtCIB22 | LYR family of Fe/S cluster 
biogenesis protein | chr4:16556825-16558846 FORWARD LENGTH=746
Length=746

 Score =  628 bits (340),  Expect = 8e-180
 Identities = 378/395 (96%), Gaps = 7/395 (2%)
 Strand=Plus/Plus

Query  5    AATC-GGAA-ATCAGAAAATGAGCGGAGTTTCGACGGCGGCGTATTTTGCGCGGCGAGCG  62
            |||| |||| | || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  34   AATCAGGAAGA-CA-AAAATGAGCGGAGTTTCGACGGCGGCGTACTTTGCGCGGCGAGCG  91

Query  63   GCGCAGAAGGAGAGGGTTCGAATCCTTTATCGCCGTGCCCTTAAGGATACTCTCAATTGG  122
            || ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct  92   GCTCAGAAGGAGAGAGTTCGAATCCTTTACCGTCGTGCCCTTAAGGATACTCTCAATTGG  151

Query  123  GCTGTTCATCGCCATATCTTCTACCGCGACGCTTCTGATCTTCGTGAGAAGTTCAATGCC  182
            |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct  152  GCTGTTCATCGCCATATCTTCTACCGTGACGCTTCTGATCTGCGTGAGAAGTTCAATGTC  211

Query  183  AACCAAGATGTGGAGGATGTCGACAGAATCGACAAACTGATTGCTCATGGTGAAGCAGAA  242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  212  AACCAAGATGTGGAGGATGTCGACAGAATCGACAAACTGATTGCTCATGGTGAAGCAGAA  271

Query  243  TACAACAAATGGCGGCACCCTGATCCTTATATCGTTCCATGGGCTCCTGGTGGCTCAAAG  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  TACAACAAATGGCGGCACCCTGATCCTTATATCGTTCCATGGGCTCCTGGTGGCTCAAAG  331

Query  303  TTCTGTAGAAACCCGACTCCGCCTGCTGGGATTGAGATTGTGTATAACTATGGTCTAGAA  362
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  332  TTCTGTAGAAACCCGACTCCGCCTGCTGGGATTGAGATTGTGTACAACTATGGTCTAGAA  391

Query  363  GACAACCCATAA-A--CCTAGCTTCCATATTTTCA  394
            |||||||||||| |  ||||||||||||||| |||
Sbjct  392  GACAACCCATAATAAACCTAGCTTCCATATTGTCA  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18599067130


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5