BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944434
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34640.1 | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:... 2047 0.0
AT4G34650.1 | Symbols: SQS2 | squalene synthase 2 | chr4:165423... 1160 0.0
> AT4G34640.1 | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:16538282-16541926
FORWARD LENGTH=1711
Length=1711
Score = 2047 bits (1108), Expect = 0.0
Identities = 1209/1259 (96%), Gaps = 2/1259 (0%)
Strand=Plus/Plus
Query 1 TTTCTGATTC-AAA-TTTCTGGAAACAATGGGGAGCTTGGGGACGATGCTGAGATATCCG 58
||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCTGAATCAAAATTTTCTGGAAACAATGGGGAGCTTGGGGACGATGCTGAGATATCCG 240
Query 59 GATGATATATATCCGCTCCTGAAGATGAAACGAGCGATTGAGAAAGCGGAGAAGCAGATC 118
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATGACATATATCCGCTCCTGAAGATGAAACGAGCGATTGAGAAAGCGGAGAAGCAGATC 300
Query 119 CCCCCTGAGCCACACTGGGGTTTTTGCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTT 178
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 CCTCCTGAGCCACACTGGGGTTTCTGCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTT 360
Query 179 TCTCTCGTTATTCAGCAACTCAACACCGAGCTTCGTAACGCCGTGTGTGTGTTCTACTTG 238
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TCTCTCGTTATTCAGCAACTCAACACCGAGCTCCGTAACGCCGTGTGTGTGTTCTACTTG 420
Query 239 GTTCTCCGAGCTCTTGATACTGTTGAGGATGATACAAGCATACCAACTGATGAAAAGGTT 298
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GTTCTCCGAGCTCTTGATACTGTTGAGGATGATACTAGCATACCAACTGATGAAAAGGTT 480
Query 299 CCCATCCTGATAGCTTTCCACCGGCACTTATACAACACTGACTGGCATTATTCATGTGGT 358
||||||||||||||||| ||||||||| ||||| | ||||| ||||||||||||||||||
Sbjct 481 CCCATCCTGATAGCTTTTCACCGGCACATATACGATACTGATTGGCATTATTCATGTGGT 540
Query 359 ACGAACGAGTACAAGGTTCTAATGGACCAATTTCACCATGTTTCTGCAGCCTTTTTGGAA 418
||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 ACGAAGGAGTACAAGATTCTAATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAA 600
Query 419 CTTGAAAAAGGGTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTGAAAAAGGGTATCAAGAGGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATG 660
Query 479 GCCAAGTTTATCTGCCAGGAGGTAGAAACTGTTGATGACTACGATGAATACTGCCACTAT 538
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCCAAGTTTATCTGCCAAGAGGTAGAAACTGTTGATGACTACGATGAATACTGCCACTAT 720
Query 539 GTTGCTGGGCTTGTGGGTTTAGGTTTGTCGAAACTCTTCCTCGCAGCTGGATCAGAGGTT 598
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 721 GTTGCTGGGCTTGTTGGTTTAGGTTTGTCGAAACTCTTCCTCGCTGCAGGATCAGAGGTT 780
Query 599 TTGACACCAAATTGGGAGGCGATTTCCAATTCAATGGGTTTATTTCTACAGAAAACAAAC 658
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 TTGACACCAGATTGGGAGGCGATTTCCAATTCAATGGGTTTATTTCTGCAGAAAACAAAC 840
Query 659 ATTATCAGAGATTACCTTGAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCT 718
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATTATCAGAGATTATCTTGAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCT 900
Query 719 CGCGAGATTTGGGGCAAATATGCTGACAAGCTTGAGGATTTAAAATACGAGGAGAACTCA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 CGCGAGATTTGGGGCAAATATGCTGACAAGCTTGAGGATTTAAAATACGAGGAGAACACA 960
Query 779 ACCAAATCCGTACAGTGCTTGAATGAAATGGTTACCAATGCGTTGATGCATATTGAAGAT 838
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 AACAAATCCGTACAGTGCTTAAATGAAATGGTTACCAATGCGTTGATGCATATTGAAGAT 1020
Query 839 TGCCTGAAATACATGGCTGCGTTGCGTGATCCTTCCATATTTCGGTTCTGCGCCATCCCT 898
|||||||||||||||| | | ||||||||||||||||||||||||||||| |||||||||
Sbjct 1021 TGCCTGAAATACATGGTTTCCTTGCGTGATCCTTCCATATTTCGGTTCTGTGCCATCCCT 1080
Query 899 CAGATCATGGCGATTGGAACACTTGCATTATGCTATAACAATGTACAAGTATTCAGAGGC 958
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1081 CAGATCATGGCGATTGGAACACTTGCATTATGCTATAACAATGAACAAGTATTCAGAGGC 1140
Query 959 GTTGTGAAACTGAGGCGAGGTCTAACTGCTAAAGTCATTGATCGCACAAAGACAATGGCT 1018
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1141 GTTGTGAAACTGAGGCGAGGTCTTACTGCTAAAGTCATTGATCGTACAAAGACAATGGCT 1200
Query 1019 GATGTCTATGGTGCGTTCTATGATTTCTCTTGCATGCTGAAGACAAAGGTTGACAAGAAC 1078
|||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1201 GATGTCTATGGTGCTTTCTATGATTTTTCCTGCATGCTGAAGACAAAGGTTGACAAGAAC 1260
Query 1079 GATCCAAATGCTAGTAAGACACTAAACCGACTCGAAGCAGTTCAGAAACTCTGCAAAGAC 1138
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 1261 GATCCAAATGCCAGTAAGACACTAAACCGACTTGAAGCCGTTCAGAAACTCTGCAGAGAC 1320
Query 1139 ACTGGAGTCCTCCATAACAGAAAATCATATGTTAATGACAAAGGACAACCAAACAATGTC 1198
||||||| || || ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1321 GCTGGAGTTCTTCAAAACAGAAAATCTTATGTTAATGACAAAGGACAACCAAACAGTGTC 1380
Query 1199 TTTCTCATAATGGTTGTGATTCTACTGGCGATAGTCTTTGCATATCTCAGAGCAACCTG 1257
||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1381 TTTATTATAATGGTTGTGATTCTACTGGCCATAGTCTTTGCATATCTCAGAGCAAACTG 1439
> AT4G34650.1 | Symbols: SQS2 | squalene synthase 2 | chr4:16542377-16545121
FORWARD LENGTH=1448
Length=1448
Score = 1160 bits (628), Expect = 0.0
Identities = 1048/1248 (84%), Gaps = 40/1248 (3%)
Strand=Plus/Plus
Query 26 ATGGGGAGCTTGGGGACGATGCTGAGATATCCGGATGA-TATATATCCGCTCCTGAAGAT 84
||||| |||||| | ||||| ||||| |||||||||| | ||||||||||| ||||| |
Sbjct 1 ATGGGAAGCTTGAGTACGATTTTGAGACATCCGGATGAGT-TATATCCGCTCTTGAAGTT 59
Query 85 GAAACGAGCGATTGA-GAAAGCGGAGAAGCAGATCCCCCCTGAGCCACACTGGGGTTTTT 143
||||| |||||| | |||||| |||||||||| || | ||||||||||| | ||| |
Sbjct 60 GAAACTTGCGATT-ACGAAAGCTCAGAAGCAGATTCCACTTGAGCCACACTTAGCTTTCT 118
Query 144 GCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTTTCTCTCGTTATTCAGCAACTCAACA 203
| ||||| || || ||||| |||||| |||||||||||| |||||||| ||||| ||
Sbjct 119 GTTATTCAATTCTTCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCA 178
Query 204 CCGAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG 263
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 CCGAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTG 238
Query 264 AGGATGATACAAGCATACCAACTG-ATGA--AAAGGTTCCCATCCTGATAGCTTTCCACC 320
||||||| |||||| ||||| || | || |||| |||| || ||||||||||||||||
Sbjct 239 AGGATGACACAAGCGTACCAG-TGGA-GATCAAAG-TTCCAATTCTGATAGCTTTCCACC 295
Query 321 GGCACT-TATACAACACTGACTGGCATTATTCATGTGGTACGAACGAGTACAAGGTTCTA 379
| || | ||||| | ||||||||||| |||||||||||| || ||||| || |||||
Sbjct 296 GTCA-TATATACGATGGTGACTGGCATTTTTCATGTGGTACAAAAGAGTATAAACTTCTA 354
Query 380 ATGGACCAATTTCACCATGTTTCTGCAGCCTTTT-TGGAACTTGAAAAAGGGTATCAAGA 438
||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 355 ATGGACCAATTTCACCATGTTTCTGCAGC-TTTTCTGAAACTTGAAAAAGGGTATCAAGA 413
Query 439 GGCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGCCAAGTTTATCTGCCAGGA 498
|||||| || || || |||| ||||||||||||||| ||||||||||| || ||| ||||
Sbjct 414 GGCTATTGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGA 473
Query 499 GGTAGAAACTGTTGATGACTACGATGAATACTGCCACTATGTTGCTGGGCTTGTGGGTTT 558
||||||||| |||||||||| |||||||||||||| |||| ||| || ||||| |||||
Sbjct 474 GGTAGAAACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTTGGTTT 533
Query 559 AGGTTTGTCGAAACTCTTCCTCGCAGCTGGA-TCAGAGGTTTTGACACCAAATTGGGAGG 617
||||||||| ||| ||||| | || | ||| | ||| | |||| ||| ||||| ||
Sbjct 534 AGGTTTGTCAAAAATCTTCATTGCTTC-GGAATTAGAAATACTGACTCCAGATTGGAAG- 591
Query 618 C-GATTTCCAATTCAATGGGTTTATTTCTACAGAAAACAAACATTATCAGAGATTACCTT 676
| |||||| ||||| | ||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 592 CAGATTTCAAATTCTACAGGTTTATTTCTGCAGAAAACAAACATTATCAAAGATTATCTT 651
Query 677 GAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCTCGCGAGATTTGGGGCAAA 736
|| ||||||||||||| |||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 652 GAAGACATTAATGAGAGACCAAAGTCGCGCATGTTTTGGCCTCGTGAGATTTGGGGAAAA 711
Query 737 TATGCTGACAAGCTTGAGGATTT-AAAATACGAGGAGAACTCAACCAAATCCGTACAGTG 795
|||| |||||| |||||||| || |||| | |||||||| | || ||| | || |||||
Sbjct 712 TATGTTGACAAACTTGAGGACTTCAAAA-ATGAGGAGAAAGCTACAAAAGCAGTGCAGTG 770
Query 796 CTTGAATGAAATGGTTACCAATGCGTTGA-TGCATATTGAAGATTGCCTGAAATACATGG 854
|||||||||||||| || ||||| |||| | ||| |||||||||| |||||| | |||
Sbjct 771 TTTGAATGAAATGGTCACTAATGCATTGAAT-CATGTTGAAGATTGTTTGAAATCCTTGG 829
Query 855 CTGCGTTGCGTGATCCTTCCATATTTCGGTTCT-GCGCCATCCCTCAGATCATGGCGATT 913
|| | ||||||||||| | ||||||| || || ||||||||||||||||| ||||||||
Sbjct 830 CTTCACTGCGTGATCCTGCAATATTTCAGT-CTTGCGCCATCCCTCAGATCGTGGCGATT 888
Query 914 GGAACACTTGCATTATGCTATAACAATGTACAAGTATTCAGAGGCGTTGTGAAACTGAGG 973
||||||||||| ||||||||||||||||||||||| || ||||| || |||| | ||||
Sbjct 889 GGAACACTTGCGTTATGCTATAACAATGTACAAGTGTTTAGAGGTGTCGTGAGATTGAGA 948
Query 974 CGAGGTCTAACT-GCTAAAGTCATTGATCGCACAAAGACAATGGCTGATGTCTATGGTGC 1032
|||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 949 CGAGGTCTAA-TAGCTAAAGTCATTGATCGCACAAAGACAATGGATGATGTCTACGGTGC 1007
Query 1033 GTTCTATGATTTCTCTTGCATGCTG-AAGACAAAGGTTGACAAGAACGATCCAAATGCTA 1091
|||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1008 GTTCTATGATTTTTCTTGCATGCTACAA-ACAAAGGTTGACAATAACGATCCAAATGCTA 1066
Query 1092 -GTAAGACACTAAACCGACTCGAAGC-AGTTCA-GAAACTCTGCAAAGACACTGGAGTCC 1148
| || ||| |||||||||||||| | | | || |||| | |||||||| | ||||| |
Sbjct 1067 TGAAA-ACATTAAACCGACTCGAAACCA-T-CAAGAAATTTTGCAAAGAAAATGGAGGAC 1123
Query 1149 TCCATAACAGAAAATCATATGTTAATGAC-AAAGGACAA-CCAAA-CAATGTCTTTCTCA 1205
| || || |||||||| |||||||| || ||| |||| |||| | || |||| |
Sbjct 1124 TTCACAAAAGAAAATCTTATGTTAACGATGAAAC-ACAATCCAAGGCTAT--CTTTGTTG 1180
Query 1206 TAATGGTTGTGATTCTACTGGCGATAGTCTTTGCATATCTCAGAGCAA 1253
||||| ||||| |||||||||| |||||| ||| |||||||| |||||
Sbjct 1181 TAATGTTTGTGCTTCTACTGGCCATAGTCGTTGTATATCTCAAAGCAA 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5