BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944436
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34620.1 | Symbols: SSR16 | small subunit ribosomal protein ... 577 3e-164
> AT4G34620.1 | Symbols: SSR16 | small subunit ribosomal protein
16 | chr4:16534855-16536171 REVERSE LENGTH=650
Length=650
Score = 577 bits (312), Expect = 3e-164
Identities = 361/385 (94%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 1 ACCTCAGTTTCCAAGCAGAAATGACGGTGAAGATAAGGCTGGCGCGTTTTGGTTGTAAAC 60
|||||| |||||||||||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct 60 ACCTCAATTTCCAAGCAGAGATGACGGTGAAGATAAGGCTCGCGCGTCTTGGTTGTAAAC 119
Query 61 ATCGACCCTTCTATCGTGTAGTTGCCGCCGATGACAAATCGCGGAGGGACGGTAAACAAA 120
| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 120 ACCGACCCTTCTATCGTGTAGTTGTCGCCGATGAAAAATCGCGCAGGGACGGTAAACAAA 179
Query 121 TCGAGGTTTTAGGGTTTTATGATCCACTCCAAGGGAAAGAAGATGCGAATAGAGTGAGCC 180
||||||| ||||| |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 180 TCGAGGTGTTAGGCTTTTATGATCCACTCCAAGGCAAAGAAGATGCGGATAGAGTGAGCC 239
Query 181 TCAAATTCGACAGAATCAAGTACTGGTTATCTGTTGGAGCTCAACCAACAGACTCAGTGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 TCAAATTCGACAGAATCAAGTACTGGTTATCTGTTGGAGCTCAACCAACAGACACAGTGG 299
Query 241 AAAATATGCTGTTCAGGGCCGGTTTGATACCCCCAAAGTCTATGGTAGTGGTTGGTTCGA 300
||| ||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 300 AAAGCATGCTTTTCAGGGCCGGTTTGATACCACCAAAGCCTATGGTAGTGGTCGGTTCGA 359
Query 301 AAAATGGGCAGCAA-TCTACAAGCCAACATGTTTCACCCATTACAGGTGAAATCTTGAAC 359
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAAATGGGCAG-AAGTCTACGAGCCAACATGTTTCACCCATTACAGGTGAAATCTTGAAC 418
Query 360 TAGGAGTGTTGATGCGCTGAGCAAG 384
|| ||||||||||||| ||||||||
Sbjct 419 TAAGAGTGTTGATGCGTTGAGCAAG 443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18096389640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5