BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944439

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   117    4e-26


> AT4G37210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr4:17512259-17514625 FORWARD LENGTH=1800
Length=1800

 Score =  117 bits (63),  Expect = 4e-26
 Identities = 75/80 (94%), Gaps = 4/80 (5%)
 Strand=Plus/Plus

Query  121   AAGCTCGGATGGAGAGGCTCAGTAATGAGATCAAAGGTGCATCTGGTTCAGCAACTTAAT  180
             |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   
Sbjct  1055  AAGCTCGGATGGAGAGGCTCAGTAATGAAATCAAAGGTGCATCTGGTTCAGCAACTT---  1111

Query  181   TCCTCAACCGTCTCTGAAAT  200
              |||||||||||||||||||
Sbjct  1112  -CCTCAACCGTCTCTGAAAT  1130



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8903339127


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5