BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944446
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34540.1 | Symbols: | NmrA-like negative transcriptional re... 1517 0.0
> AT4G34540.1 | Symbols: | NmrA-like negative transcriptional
regulator family protein | chr4:16498391-16502174 FORWARD LENGTH=2805
Length=2805
Score = 1517 bits (821), Expect = 0.0
Identities = 917/963 (95%), Gaps = 7/963 (1%)
Strand=Plus/Plus
Query 4 TACGGAGAGGTAT-TATAAATGGAGGAGGAGAAGAAGAAGAGCAGAGTTTTGATCATCGG 62
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 TACGGAGA-GTATATATAAATGGAGGAGGAGAAGAAGAAGAGCAGAGTTTTGATCATCGG 1683
Query 63 AGCAACAGGAAGATTAGGCAACTATTTGACCCGTTTCAGCATCGAGTCGGGTCACCCGAC 122
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1684 AGCAACAGGAAGATTAGGGAACTATTTGACCCGTTTCAGCATCGAATCGGGTCACCCGAC 1743
Query 123 TTTCGCACTCATCAGAAACTCCACTTC-CTCCGCTAAGCTGAAATCTCTCTTCGACGCCG 181
|||||| |||||||||||| |||| || ||||| ||||||||||||||||| ||||||||
Sbjct 1744 TTTCGCTCTCATCAGAAACACCAC-TCTCTCCGATAAGCTGAAATCTCTCTCCGACGCCG 1802
Query 182 GCGTTACCCTCCTCAAAGGTTCATTGGAGGATGAAGGAAGCTTAGAAGAAGCAGTGAGTA 241
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1803 GCGTTACCCTCCTCAAAGGTTCATTGGAGGATGAAGGAAGCTTAGCAGAAGCAGTGAGTA 1862
Query 242 AAGTAGATGTGGTGATCTCTGCAATTCCATCAAAACATGTTCTTGATCAGAAACTCCTCA 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 AAGTAGATGTGGTGATCTCTGCAATTCCATCAAAACATGTTCTTGATCAGAAACTCCTCG 1922
Query 302 TCAAAGTCATCAAACAAGCTGGTTCCATCAAGAGGTTTATTCCTGCTGAATATGGAGCAA 361
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 TCAGAGTTATCAAACAAGCTGGTTCCATCAAGAGGTTTATTCCTGCTGAATATGGAGCAA 1982
Query 362 ATCCTGATAAAACTCAAATCTCCGATCTTGATCATGGGTTCTATTCAAAGAAATGTGAGA 421
||||||||||||||||| |||| ||||||||||||| |||||||| ||||||| ||||
Sbjct 1983 ATCCTGATAAAACTCAAGTCTCGGATCTTGATCATGACTTCTATTCGAAGAAATCAGAGA 2042
Query 422 TTAAGCGTATGATAGAATCAGAGGGGATTCCATATACATACATTTGCTGCGGATTGTTCA 481
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2043 TTAGGCATATGATAGAATCAGAGGGGATTCCATATACATACATTTGCTGCGGACTGTTCA 2102
Query 482 TGAGAATTCTACTTCCATCGCTTGTGCAACCGGGGCTTCAATCGCCTCCAATC-GATAAA 540
||||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 2103 TGAGAGTTCTACTTCCATCGCTTGTGCAACCGGGGCTTCAATCTCCTCCAA-CAGATAAA 2161
Query 541 GTCACAGTTTTTGGAGATGGAAACGTTAAAGCTGTGTTCGTGAATGATGTCGATGTTGCA 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2162 GTCACAGTTTTTGGAGATGGAAACGTTAAAGCTGTTTTCGTGAATGATGTCGATGTTGCA 2221
Query 601 GCATTTACCATCAAAACGATAGATGATCCTCGAACACTGAATAAAACATTGTACCTTAGA 660
|||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 2222 GCATTTACTATCAAGACGATAGATGATCCTCGAACACTGAATAAGACCTTGTACCTTAGC 2281
Query 661 CCGCCCGAAAACATATGTTCTATGAATGATCTTGTTGAGCTCTGGGAGGGCAAGATTGAG 720
||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2282 CCGCCCGGAAACATATGTTCCATGAATGATCTTGTCGAGCTCTGGGAGGGCAAGATTGAG 2341
Query 721 AAGAAGCTTGAGAAAACATTTGTTACAGAGAGTCAACTTCTCAAGAAGATCAAAGAAACT 780
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2342 AAGAAGCTTGAGAAAACGTTTGCTACAGAGAATCAACTTCTCAAGAAGATCAAAGAAACT 2401
Query 781 CCATATCCGGATAACATGGAGATGGTCTTCATATACTCTGTCTTTATCAAAGGAGATCAC 840
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2402 CCATATCCGGATAACATGGAGATGGTATTCATATACTCTGTCTTTATCAAAGGAGATCAC 2461
Query 841 ACGTACTTCGACATCGAGTCTAGTGGTGAAGTGAATGGTACTGAGCTTTACCCTGATGTC 900
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 2462 ACATACTTCGACATCGAGTCTTGTGGTGGAGTGAATGGTACTGAGCTTTACCCTGATGTC 2521
Query 901 AAATACATGACCGTGAGCGAGTTTCTTGATACTCTTCTCTAGAATTATAA-CCAAATAGC 959
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2522 AAATACATGACCGTGAGCGAGTTTCTTGATACTCTTCTCTAGAATTATAAACCAAACAGC 2581
Query 960 AAA 962
|||
Sbjct 2582 AAA 2584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47069395739
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5