BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944446 Length=962 Score E Sequences producing significant alignments: (Bits) Value AT4G34540.1 | Symbols: | NmrA-like negative transcriptional re... 1517 0.0 > AT4G34540.1 | Symbols: | NmrA-like negative transcriptional regulator family protein | chr4:16498391-16502174 FORWARD LENGTH=2805 Length=2805 Score = 1517 bits (821), Expect = 0.0 Identities = 917/963 (95%), Gaps = 7/963 (1%) Strand=Plus/Plus Query 4 TACGGAGAGGTAT-TATAAATGGAGGAGGAGAAGAAGAAGAGCAGAGTTTTGATCATCGG 62 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1625 TACGGAGA-GTATATATAAATGGAGGAGGAGAAGAAGAAGAGCAGAGTTTTGATCATCGG 1683 Query 63 AGCAACAGGAAGATTAGGCAACTATTTGACCCGTTTCAGCATCGAGTCGGGTCACCCGAC 122 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1684 AGCAACAGGAAGATTAGGGAACTATTTGACCCGTTTCAGCATCGAATCGGGTCACCCGAC 1743 Query 123 TTTCGCACTCATCAGAAACTCCACTTC-CTCCGCTAAGCTGAAATCTCTCTTCGACGCCG 181 |||||| |||||||||||| |||| || ||||| ||||||||||||||||| |||||||| Sbjct 1744 TTTCGCTCTCATCAGAAACACCAC-TCTCTCCGATAAGCTGAAATCTCTCTCCGACGCCG 1802 Query 182 GCGTTACCCTCCTCAAAGGTTCATTGGAGGATGAAGGAAGCTTAGAAGAAGCAGTGAGTA 241 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1803 GCGTTACCCTCCTCAAAGGTTCATTGGAGGATGAAGGAAGCTTAGCAGAAGCAGTGAGTA 1862 Query 242 AAGTAGATGTGGTGATCTCTGCAATTCCATCAAAACATGTTCTTGATCAGAAACTCCTCA 301 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1863 AAGTAGATGTGGTGATCTCTGCAATTCCATCAAAACATGTTCTTGATCAGAAACTCCTCG 1922 Query 302 TCAAAGTCATCAAACAAGCTGGTTCCATCAAGAGGTTTATTCCTGCTGAATATGGAGCAA 361 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1923 TCAGAGTTATCAAACAAGCTGGTTCCATCAAGAGGTTTATTCCTGCTGAATATGGAGCAA 1982 Query 362 ATCCTGATAAAACTCAAATCTCCGATCTTGATCATGGGTTCTATTCAAAGAAATGTGAGA 421 ||||||||||||||||| |||| ||||||||||||| |||||||| ||||||| |||| Sbjct 1983 ATCCTGATAAAACTCAAGTCTCGGATCTTGATCATGACTTCTATTCGAAGAAATCAGAGA 2042 Query 422 TTAAGCGTATGATAGAATCAGAGGGGATTCCATATACATACATTTGCTGCGGATTGTTCA 481 ||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2043 TTAGGCATATGATAGAATCAGAGGGGATTCCATATACATACATTTGCTGCGGACTGTTCA 2102 Query 482 TGAGAATTCTACTTCCATCGCTTGTGCAACCGGGGCTTCAATCGCCTCCAATC-GATAAA 540 ||||| ||||||||||||||||||||||||||||||||||||| ||||||| | |||||| Sbjct 2103 TGAGAGTTCTACTTCCATCGCTTGTGCAACCGGGGCTTCAATCTCCTCCAA-CAGATAAA 2161 Query 541 GTCACAGTTTTTGGAGATGGAAACGTTAAAGCTGTGTTCGTGAATGATGTCGATGTTGCA 600 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2162 GTCACAGTTTTTGGAGATGGAAACGTTAAAGCTGTTTTCGTGAATGATGTCGATGTTGCA 2221 Query 601 GCATTTACCATCAAAACGATAGATGATCCTCGAACACTGAATAAAACATTGTACCTTAGA 660 |||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||| Sbjct 2222 GCATTTACTATCAAGACGATAGATGATCCTCGAACACTGAATAAGACCTTGTACCTTAGC 2281 Query 661 CCGCCCGAAAACATATGTTCTATGAATGATCTTGTTGAGCTCTGGGAGGGCAAGATTGAG 720 ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 2282 CCGCCCGGAAACATATGTTCCATGAATGATCTTGTCGAGCTCTGGGAGGGCAAGATTGAG 2341 Query 721 AAGAAGCTTGAGAAAACATTTGTTACAGAGAGTCAACTTCTCAAGAAGATCAAAGAAACT 780 ||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||| Sbjct 2342 AAGAAGCTTGAGAAAACGTTTGCTACAGAGAATCAACTTCTCAAGAAGATCAAAGAAACT 2401 Query 781 CCATATCCGGATAACATGGAGATGGTCTTCATATACTCTGTCTTTATCAAAGGAGATCAC 840 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2402 CCATATCCGGATAACATGGAGATGGTATTCATATACTCTGTCTTTATCAAAGGAGATCAC 2461 Query 841 ACGTACTTCGACATCGAGTCTAGTGGTGAAGTGAATGGTACTGAGCTTTACCCTGATGTC 900 || |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 2462 ACATACTTCGACATCGAGTCTTGTGGTGGAGTGAATGGTACTGAGCTTTACCCTGATGTC 2521 Query 901 AAATACATGACCGTGAGCGAGTTTCTTGATACTCTTCTCTAGAATTATAA-CCAAATAGC 959 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 2522 AAATACATGACCGTGAGCGAGTTTCTTGATACTCTTCTCTAGAATTATAAACCAAACAGC 2581 Query 960 AAA 962 ||| Sbjct 2582 AAA 2584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47069395739 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5