BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944450
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34520.1 | Symbols: FAE1, KCS18 | 3-ketoacyl-CoA synthase 18... 2366 0.0
> AT4G34520.1 | Symbols: FAE1, KCS18 | 3-ketoacyl-CoA synthase
18 | chr4:16494205-16495842 FORWARD LENGTH=1638
Length=1638
Score = 2366 bits (1281), Expect = 0.0
Identities = 1458/1544 (94%), Gaps = 9/1544 (1%)
Strand=Plus/Plus
Query 22 ATGACGTCCGTTAACGTTAAGCTCCTTTACCATTACGTCTTAACCAACTTTTTCAACCTC 81
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGACGTCCGTTAACGTTAAGCTCCTTTACCGTTACGTCTTAACCAACTTTTTCAACCTC 60
Query 82 TGTTTGTTCCCGTTAACGGCGTTCGTCGCCGGAAAAGCCTCTCGGCTTACCACAAACGAT 141
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 61 TGTTTGTTCCCGTTAACGGCGTTCCTCGCCGGAAAAGCCTCTCGGCTTACCATAAACGAT 120
Query 142 CTCCACAACTTCTTTTCCTATCTCCAACACAACCTTATAACCGTAGCTATACTCTTTGCT 201
|||||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 121 CTCCACAACTTCCTTTCCTATCTCCAACACAACCTTATAACAGTAACTTTACTCTTTGCT 180
Query 202 TTCACTGTCTTT-GGTTTTGTTCTCTACATGGTAACCCGACCCAAACCGGTTTATCTCGT 260
|||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 181 TTCACTGT-TTTCGGTTTGGTTCTCTACATCGTAACCCGACCCAATCCGGTTTATCTCGT 239
Query 261 TGACTACTCGTGCTACCTTCCACCACCGCATCTCAGAGCCAGTGTCTCCAGAGTCATGGA 320
|||||||||||| |||||||||||||||||||||| || |||||||| | |||||||||
Sbjct 240 TGACTACTCGTGTTACCTTCCACCACCGCATCTCAAAGTTAGTGTCTCTAAAGTCATGGA 299
Query 321 TGTTTTCTATCAAATAAGAAAAGCTGATA---CTTCACGGAACGTGGCATGCGATGATCC 377
| ||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 300 TATTTTCTACCAAATAAGAAAAGCTGATACTTCTTCACGGAACGTGGCATGTGATGATCC 359
Query 378 GTCCTCGCTTGATTTCCTGAGGAAGATTCAAGAGCGTTCAGGTCTAGGTGATGAGACCTA 437
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 GTCCTCGCTCGATTTCCTGAGGAAGATTCAAGAGCGTTCAGGTCTAGGTGATGAGACGTA 419
Query 438 CGGTCCCGAGGGACTCCTTCACGTGCCCCCACGGAAGACTTTTGCAGCGGCACGTGAAGA 497
| |||| ||||||||| ||||||| || || |||||||||||||||||| ||||||||||
Sbjct 420 CAGTCCTGAGGGACTCATTCACGTACCACCGCGGAAGACTTTTGCAGCGTCACGTGAAGA 479
Query 498 GACAGAGCAGGTTATCATTGGTGCGCTCGAAAATCTATTCCAGAACACCAAAGTTAACCC 557
||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 480 GACAGAGAAGGTTATCATCGGTGCGCTCGAAAATCTATTCGAGAACACCAAAGTTAACCC 539
Query 558 TAGAGAGATTGGTATACTTGTGGTGAACTCAAGCATGTTTAATCCAACTCCTTCGCTTTC 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TAGAGAGATTGGTATACTTGTGGTGAACTCAAGCATGTTTAATCCAACTCCTTCGCTATC 599
Query 618 CGCGATGGTCGTTAATACTTTCAAGCTCCGAAGCAACATCAAAAGCTTTAATCTTGGAGG 677
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 CGCTATGGTCGTTAATACTTTCAAGCTCCGAAGCAACATCAAAAGCTTTAATCTAGGAGG 659
Query 678 AATGGGTTGTAGTGCTGGTGTTATCGCCATTGATCTT-GCGAAGGACTTGTTGCATGTTC 736
|||||||||||||||||||||||| ||||||||| || || || ||||||||||||||||
Sbjct 660 AATGGGTTGTAGTGCTGGTGTTATTGCCATTGAT-TTGGCTAAAGACTTGTTGCATGTTC 718
Query 737 ATAAAAACACTTATGCTCTTGTGGTGAGCACTGAGAACATCACTCAAGGGATTTATGCTG 796
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 719 ATAAAAACACTTATGCTCTTGTGGTGAGCACTGAGAACATCACACAAGGCATTTATGCTG 778
Query 797 GCGAAAATAGATCAATGATGGTTAGCAATTGCTTGTTCCGTGTTGGTGGGGCCGCGATTT 856
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 GAGAAAATAGATCAATGATGGTTAGCAATTGCTTGTTTCGTGTTGGTGGGGCCGCGATTT 838
Query 857 TGCTCTCCAACAAGCCTAGAGATCGGAGACGGTCCAAGTACAAGCTAGCTCACACGGTTC 916
||||||| |||||| | |||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 839 TGCTCTCTAACAAGTCGGGAGACCGGAGACGGTCCAAGTACAAGCTAGTTCACACGGTCC 898
Query 917 GAACCCATACGGGAGCTGATGACAAGTCTTTTCGATGTGTGCAACAAGAAGACGATGAGA 976
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAACGCATACTGGAGCTGATGACAAGTCTTTTCGATGTGTGCAACAAGAAGACGATGAGA 958
Query 977 GTGGTAAAATCGGTGTTTGTCTGTCAAAGGACATAACCAATGTTGCGGGGACAACGCTAA 1036
| || |||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 959 GCGGCAAAATCGGAGTTTGTCTGTCAAAGGACATAACCAATGTTGCGGGGACAACACTTA 1018
Query 1037 AGAAAAACATAGCAACATTGGGTCCGTTGATTCTTCCTTTAAGCGAGAAA-TTTCttttt 1095
|||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1019 CGAAAAATATAGCAACATTGGGTCCGTTGATTCTTCCTTTAAGCGA-AAAGTTTCTTTTT 1077
Query 1096 ttCGTTACCTTCGTCGCCAAGAAACTTTTAAAGGACAGAATCAAGCATTACTATGTCCCG 1155
|||| |||||||||||||||||||||| ||||||| | |||||||||||||||||| |||
Sbjct 1078 TTCGCTACCTTCGTCGCCAAGAAACTTCTAAAGGATAAAATCAAGCATTACTATGTTCCG 1137
Query 1156 GATTTTAAGCTTGCTATTGACCATTTCTGTATTCATGCCGGAGGCAGAGCCGTGATCGAT 1215
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GATTTCAAGCTTGCTGTTGACCATTTCTGTATTCATGCCGGAGGCAGAGCCGTGATCGAT 1197
Query 1216 GAGCTAGAGAAGAGCTTAGGACTATCACCGATCGACGTGGAGGCATCTAGATCAACGTTA 1275
||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1198 GAGCTAGAGAAGAACTTAGGACTATCGCCGATCGATGTGGAGGCATCTAGATCAACGTTA 1257
Query 1276 CATAGATTTGGGAATACGTCGTCTAGCTCAATTTGGTATGAATTGGCATACATAGAGGCA 1335
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 1258 CATAGATTTGGGAATACTTCATCTAGCTCAATTTGGTATGAATTAGCATACATAGAGGCA 1317
Query 1336 AAAGGAAGAATGAAGAAAGGGAATAAAGCTTGGCAGATTGCTTTAGGATCAGGGTTTAAG 1395
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAGGGAAGAATGAAGAAAGGGAATAAAGCTTGGCAGATTGCTTTAGGATCAGGGTTTAAG 1377
Query 1396 TGTAATAGTGCGGTTTGGGTGGCTCTACGCAATGTCAAGCCTTCGGCAAATAGTCCTTGG 1455
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1378 TGTAATAGTGCGGTTTGGGTGGCTCTACGCAATGTCAAGGCATCGGCAAATAGTCCTTGG 1437
Query 1456 CAACATTGCATCGATAGATATCCGGCTAAAATTGATTCTGATTTGTCAAAGTCAGAGACT 1515
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1438 CAACATTGCATCGATAGATATCCGGTTAAAATTGATTCTGATTTGTCAAAGTCAAAGACT 1497
Query 1516 CATGTCCAAAACGGTCGGTCCTAATTTGATGTACCCGAGTGCCA 1559
||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1498 CATGTCCAAAACGGTCGGTCCTAATTTGATGTATCTGAGTGCCA 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76957435485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5