BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944453
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34490.1 | Symbols: ATCAP1, CAP 1, CAP1 | cyclase associated... 2468 0.0
> AT4G34490.1 | Symbols: ATCAP1, CAP 1, CAP1 | cyclase associated
protein 1 | chr4:16484530-16487417 REVERSE LENGTH=1859
Length=1859
Score = 2468 bits (1336), Expect = 0.0
Identities = 1429/1473 (97%), Gaps = 9/1473 (1%)
Strand=Plus/Plus
Query 4 CTTTTGCTGATCG-AAAAATGGAAGAGGATTTGATTAAGCGCCTTGAAGCTGCGGTTACG 62
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 45 CTTTTGTTGATCGAAAAAATGGAAGAGGATTTGATTAAGCGCCTTGAAGCTGCGGTTACG 104
Query 63 AGGCTTGAAGGGATCTCAAGCAACGGAGGAGGAGGAGTTGTTTCTCTTTCCCGCGGAGGA 122
|||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 105 AGGCTTGAGGGGATCTCAAGCAAC---GGAGGAGGAGTAGTTTCTCTTTCCCGCGGAGGA 161
Query 123 GATTTCTCCTCCGGCGCCGGAACCGATGTCGCGTCGTCCGATCCATCGATTCTGGCTTAT 182
||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 162 GATTTCTCCTCCGCCGCCGGAATCGATATCGCGTCGTCCGATCCATCGATTCTGGCTTAT 221
Query 183 GAAGATCTGATTTCTCAATGCGTTGGTAGGGCTCTGACCGCGGCTGAGAAAATCGGTGGA 242
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 222 GAAGATCTGATTTCTCAATGTGTTGGTAGGGCTCTGACCGCCGCTGAGAAAATCGGTGGA 281
Query 243 CCTGTTTTAGATGTGACGAAGATTGTCGCCGAAGCTTTTGCTTCGCAGAAGGAGCTGCTT 302
|||||| |||||||||| ||||| |||||||||||||||||||| || ||||||||||||
Sbjct 282 CCTGTTCTAGATGTGACTAAGATAGTCGCCGAAGCTTTTGCTTCCCAAAAGGAGCTGCTT 341
Query 303 GTTCGCATCAAGCAAACTCAGAAGCCTGACCTCGCTGGATTGGCTGGATTTCT-AAAGCC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 342 GTTCGCATCAAGCAAACTCAGAAGCCTGACCTCGCTGGATTGGCTGGATTTCTCAAA-CC 400
Query 362 GTTGAATGATGTTACAATGAAAGCTAATGCAATGACTGAAGGAAAAAGGTCGGATTTTTT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GTTGAATGATGTTACAATGAAAGCTAATGCAATGACTGAAGGAAAAAGGTCGGATTTTTT 460
Query 422 CAATCACTTGAAGGCTGCATCCGATAGTTTATCTGCATTGGCTTGGATTGCTTTCACTGG 481
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 461 CAATCACTTGAAGGCTGCATGCGATAGTTTATCTGCATTGGCTTGGATTGCTTTCACTGG 520
Query 482 CAAAGATTGTGGTATGAGTATGCCAATAGCTCATGTGGAAGAAAGTTGGCAAATGGCTGA 541
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GAAAGATTGTGGTATGAGCATGCCAATAGCTCATGTGGAAGAAAGTTGGCAAATGGCTGA 580
Query 542 ATTTTACAACAATAAGGTTCTGGTGGAGTATCGTAACAAAGACGCAGATCATGTGGAATG 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 581 GTTTTACAACAATAAGGTTCTGGTGGAGTATCGTAACAAAGACGCAGATCATGTGGAGTG 640
Query 602 GGCTAAAGCCTTAAAAGAACTTTACTTACCTGGTTTAAGGGAATATGTCAAAAGTCATTA 661
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 641 GGCTAAAGCCTTAAAAGAACTTTATTTACCTGGTTTAAGGGAATATGTCAAAAGTCATTA 700
Query 662 CCCCTTGGGACCTGTATGGAATGCATCAGGGAAACCTGCTAGTGCTCCTGCAAAGGCTCC 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 701 CCCCTTGGGACCTGTATGGAATGCATCAGGGAAACCTGCTAGTGCTCCTGCAAAGGGTCC 760
Query 722 ACCTGGTGCTCCTGCAAAGGCTCCACCAGCACCCCTCTTCAGTTCTGAATCTTCAAAGCC 781
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 761 ACCTGGTGCTCCTGC---TCCTCCACCAGCACCCCTCTTCAGTGCTGAATCTTCAAAGCC 817
Query 782 ATCATCATCGTCAAACCAGAAACAAGGGATGTCTGCTGTTTTCCAGCAGCTCAGCTCGGG 841
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 818 ATCATCATCGTCAAACCAGAAACAAGGGATGTCTGCTGTTTTCCAGCAACTCAGCTCGGG 877
Query 842 TGCTGTGACCTCAGGTCTTAGAAAAGTGACGGATGATATGAAGACAAAGAACCGTGCTGA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TGCTGTGACCTCAGGTCTTAGAAAAGTGACGGATGATATGAAGACAAAGAACCGTGCTGA 937
Query 902 TAGATCTGGAGCTGTTAGTGCCGTTGAGAAGGAAACACGAACCAGTAAACCGGCCTTTTC 961
||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 938 TAGATCTGGAGCTGTTAGTGCGGTTGAGAAGGAAACTCGTACCAGTAAACCGGCCTTTTC 997
Query 962 GAAAACTGGACCACCGAAGATGGAACTTCAAATGGGTCGCAAGTGGGCTGTTGAGAACCA 1021
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 998 GAAAACTGGACCACCGAAAATGGAACTTCAAATGGGTCGCAAGTGGGCTGTTGAGAACCA 1057
Query 1022 AATTGGGAAGAAGGACTTGGTTATAAGCGAGTGTGATTCCAAACAGTCTGTGTACATATA 1081
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1058 AATTGGGAAGAAGGACTTGGTTATCAGCGAGTGTGATTCCAAACAGTCTGTGTACATATA 1117
Query 1082 TGGTTGCAAAGATTCTGTCTTGCAGATACAAGGAAAAGTGAATAACATCACCATTGACAA 1141
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1118 TGGTTGCAAAGATTCTGTCTTGCAAATACAAGGAAAAGTGAATAACATCACCATTGACAA 1177
Query 1142 ATGCACCAAAATGGGTGTTGTTTTCACGGATGTTGTTGCTGCATTTGAGATTGTGAATTG 1201
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ATGCACGAAAGTGGGTGTTGTTTTCACGGATGTTGTTGCTGCATTTGAGATTGTGAATTG 1237
Query 1202 CACCAACGTAGAAGTGCAATGTCAGGGTTCAGCTCCCACAGTTTCTGTGGACAACACAAC 1261
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CAACAACGTAGAAGTGCAATGTCAGGGTTCAGCTCCCACAGTTTCTGTGGACAACACAAC 1297
Query 1262 TGGCTGTCAGTTATATCTAAACAAAGACTCATTAGAAACAGCTATAACAACAGCCAAATC 1321
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1298 TGGCTGTCAGTTATATCTAAACAAAGACTCATTAGAGACAGCTATAACAACAGCCAAATC 1357
Query 1322 AAGTGAGATCAATGTAATGGTGCCCGGTGCTACCCCTGATGGAGATTGGGTGGAACATGC 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AAGTGAGATCAATGTAATGGTGCCCGGTGCTACCCCTGATGGAGATTGGGTGGAACATGC 1417
Query 1382 GCTGCCCCAACAGTACAATCATGTGTTTACTGAAGGGAAGTTTGAGACAACACCGGTCTC 1441
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GCTGCCTCAACAGTACAATCATGTGTTTACTGAAGGGAAGTTTGAGACAACACCGGTCTC 1477
Query 1442 GCATTCAGGTGCCTAAGCAAAGGAGAAACTATT 1474
|||||||||||||||||||||||||||||||||
Sbjct 1478 GCATTCAGGTGCCTAAGCAAAGGAGAAACTATT 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72840990795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5