BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944456
Length=501
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34210.1 | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:163790... 610 4e-174
AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:164800... 604 2e-172
> AT4G34210.1 | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:16379003-16379461
FORWARD LENGTH=459
Length=459
Score = 610 bits (330), Expect = 4e-174
Identities = 420/463 (91%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 23 ATGTCGTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 82
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 60
Query 83 GCGGTAGCAATCCAATCTCAGACCATAGCACATATGGTTGAAGACGATTGCGCCGCTAAT 142
||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 61 GCGGTAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGAT 120
Query 143 GGAATCCCTCTTGCAAACGTG-ACAAGCAAGACTCTTGCGAAAGTGATTGAGTACTGCAA 201
||||||||||||||||||||| | |||||||| ||||| ||||||||| |||||||||||
Sbjct 121 GGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGTGAAAGTGATCGAGTACTGCAA 179
Query 202 GAAGCACCACGTCGATGAGGCTAACCCTATCTCTGAAGATGAACTCAAGAAGTGGGAC-A 260
||| ||||||||||| |||||||| |||||||||||||| || ||||| || |||||| |
Sbjct 180 GAAACACCACGTCGACGAGGCTAATCCTATCTCTGAAGAGGATCTCAACAACTGGGACGA 239
Query 261 CGGAGTTCATGGAAAC-CGATCAATCCACGATATTTGATCTCATTCTTGCTGCGAATTAC 319
| |||||||||| | ||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct 240 -GAAGTTCATGGAT-CTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTAC 297
Query 320 CTAAACATCAAAAGCTTGCTTGATCTCACATGTCAAACTATTGCGGATATGATCAAAGGC 379
|| ||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 298 CTCAACATAAAAAGCTTGCTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAGGC 357
Query 380 AAGAATCCAGAGGAGATTCGTACA-CTTTTCAACATTAAGAATGATTTTACACCTGAGGA 438
|||| |||||||||||||||| || |||| ||||||| ||||||||||||||||||||||
Sbjct 358 AAGACTCCAGAGGAGATTCGTTCAACTTT-CAACATTGAGAATGATTTTACACCTGAGGA 416
Query 439 GGAAGAAGAGGTTCGTAGGGAGAATCAATGGGCTTTTGAATGA 481
||||||| ||||||| |||||||||||||||||||||||||
Sbjct 417 AGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA 459
> AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:16480022-16480480
REVERSE LENGTH=459
Length=459
Score = 604 bits (327), Expect = 2e-172
Identities = 419/463 (90%), Gaps = 8/463 (2%)
Strand=Plus/Plus
Query 23 ATGTCGTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 82
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 60
Query 83 GCGGTAGCAATCCAATCTCAGACCATAGCACATATGGTTGAAGACGATTGCGCCGCTAAT 142
||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 61 GCGGTAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGAT 120
Query 143 GGAATCCCTCTTGCAAACGTG-ACAAGCAAGACTCTTGCGAAAGTGATTGAGTACTGCAA 201
||||||||||||||||||||| | |||||||| ||||| ||||||||| |||||||||||
Sbjct 121 GGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGTGAAAGTGATCGAGTACTGCAA 179
Query 202 GAAGCACCACGTCGATGAGGCTAACCCTATCTCTGAAGATGAACTCAAGAAGTGGGAC-A 260
||| |||||||||| |||||||| |||||||||||||| || ||||| ||||||||| |
Sbjct 180 GAAATACCACGTCGACGAGGCTAATCCTATCTCTGAAGAGGATCTCAACAAGTGGGACGA 239
Query 261 CGGAGTTCATGGAAAC-CGATCAATCCACGATATTTGATCTCATTCTTGCTGCGAATTAC 319
| |||||||||| | ||| |||||||| || ||||| ||||| |||||||||||||||
Sbjct 240 -GAAGTTCATGGAT-CTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTAC 297
Query 320 CTAAACATCAAAAGCTTGCTTGATCTCACATGTCAAACTATTGCGGATATGATCAAAGGC 379
|| ||||| ||||||||| ||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 298 CTCAACATAAAAAGCTTGTTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAGGC 357
Query 380 AAGAATCCAGAGGAGATTCGTACA-CTTTTCAACATTAAGAATGATTTTACACCTGAGGA 438
|||| |||||||||||||||| || |||| ||||||| ||||||||||||||||||||||
Sbjct 358 AAGACTCCAGAGGAGATTCGTTCAACTTT-CAACATTGAGAATGATTTTACACCTGAGGA 416
Query 439 GGAAGAAGAGGTTCGTAGGGAGAATCAATGGGCTTTTGAATGA 481
||||||| ||||||| |||||||||||||||||||||||||
Sbjct 417 AGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23911453972
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5