BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944456 Length=501 Score E Sequences producing significant alignments: (Bits) Value AT4G34210.1 | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:163790... 610 4e-174 AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:164800... 604 2e-172 > AT4G34210.1 | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:16379003-16379461 FORWARD LENGTH=459 Length=459 Score = 610 bits (330), Expect = 4e-174 Identities = 420/463 (91%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 23 ATGTCGTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 82 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 60 Query 83 GCGGTAGCAATCCAATCTCAGACCATAGCACATATGGTTGAAGACGATTGCGCCGCTAAT 142 ||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| || Sbjct 61 GCGGTAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGAT 120 Query 143 GGAATCCCTCTTGCAAACGTG-ACAAGCAAGACTCTTGCGAAAGTGATTGAGTACTGCAA 201 ||||||||||||||||||||| | |||||||| ||||| ||||||||| ||||||||||| Sbjct 121 GGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGTGAAAGTGATCGAGTACTGCAA 179 Query 202 GAAGCACCACGTCGATGAGGCTAACCCTATCTCTGAAGATGAACTCAAGAAGTGGGAC-A 260 ||| ||||||||||| |||||||| |||||||||||||| || ||||| || |||||| | Sbjct 180 GAAACACCACGTCGACGAGGCTAATCCTATCTCTGAAGAGGATCTCAACAACTGGGACGA 239 Query 261 CGGAGTTCATGGAAAC-CGATCAATCCACGATATTTGATCTCATTCTTGCTGCGAATTAC 319 | |||||||||| | ||| |||||||| || ||||| ||||| ||||||||||||||| Sbjct 240 -GAAGTTCATGGAT-CTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTAC 297 Query 320 CTAAACATCAAAAGCTTGCTTGATCTCACATGTCAAACTATTGCGGATATGATCAAAGGC 379 || ||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||| Sbjct 298 CTCAACATAAAAAGCTTGCTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAGGC 357 Query 380 AAGAATCCAGAGGAGATTCGTACA-CTTTTCAACATTAAGAATGATTTTACACCTGAGGA 438 |||| |||||||||||||||| || |||| ||||||| |||||||||||||||||||||| Sbjct 358 AAGACTCCAGAGGAGATTCGTTCAACTTT-CAACATTGAGAATGATTTTACACCTGAGGA 416 Query 439 GGAAGAAGAGGTTCGTAGGGAGAATCAATGGGCTTTTGAATGA 481 ||||||| ||||||| ||||||||||||||||||||||||| Sbjct 417 AGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA 459 > AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:16480022-16480480 REVERSE LENGTH=459 Length=459 Score = 604 bits (327), Expect = 2e-172 Identities = 419/463 (90%), Gaps = 8/463 (2%) Strand=Plus/Plus Query 23 ATGTCGTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 82 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 60 Query 83 GCGGTAGCAATCCAATCTCAGACCATAGCACATATGGTTGAAGACGATTGCGCCGCTAAT 142 ||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| || Sbjct 61 GCGGTAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGAT 120 Query 143 GGAATCCCTCTTGCAAACGTG-ACAAGCAAGACTCTTGCGAAAGTGATTGAGTACTGCAA 201 ||||||||||||||||||||| | |||||||| ||||| ||||||||| ||||||||||| Sbjct 121 GGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGTGAAAGTGATCGAGTACTGCAA 179 Query 202 GAAGCACCACGTCGATGAGGCTAACCCTATCTCTGAAGATGAACTCAAGAAGTGGGAC-A 260 ||| |||||||||| |||||||| |||||||||||||| || ||||| ||||||||| | Sbjct 180 GAAATACCACGTCGACGAGGCTAATCCTATCTCTGAAGAGGATCTCAACAAGTGGGACGA 239 Query 261 CGGAGTTCATGGAAAC-CGATCAATCCACGATATTTGATCTCATTCTTGCTGCGAATTAC 319 | |||||||||| | ||| |||||||| || ||||| ||||| ||||||||||||||| Sbjct 240 -GAAGTTCATGGAT-CTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTAC 297 Query 320 CTAAACATCAAAAGCTTGCTTGATCTCACATGTCAAACTATTGCGGATATGATCAAAGGC 379 || ||||| ||||||||| ||||||||||||| |||||| ||||||| |||||||||||| Sbjct 298 CTCAACATAAAAAGCTTGTTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAGGC 357 Query 380 AAGAATCCAGAGGAGATTCGTACA-CTTTTCAACATTAAGAATGATTTTACACCTGAGGA 438 |||| |||||||||||||||| || |||| ||||||| |||||||||||||||||||||| Sbjct 358 AAGACTCCAGAGGAGATTCGTTCAACTTT-CAACATTGAGAATGATTTTACACCTGAGGA 416 Query 439 GGAAGAAGAGGTTCGTAGGGAGAATCAATGGGCTTTTGAATGA 481 ||||||| ||||||| ||||||||||||||||||||||||| Sbjct 417 AGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA 459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23911453972 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5