BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944461
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34420.1 | Symbols: | P-loop containing nucleoside triphosp... 1827 0.0
AT2G15730.1 | Symbols: | P-loop containing nucleoside triphosp... 1044 0.0
AT4G34419.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 597 1e-169
> AT4G34420.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16458068-16460652
FORWARD LENGTH=1517
Length=1517
Score = 1827 bits (989), Expect = 0.0
Identities = 1086/1132 (96%), Gaps = 10/1132 (1%)
Strand=Plus/Plus
Query 389 GTGTCTGAAAAGGAAAATCAATGTCTTTATGTTCTGTTCCTTTCTGATCTCTCAGTCTCT 448
||||||||||| ||| |||||||||||||||||||||| ||||||||||||| | |||
Sbjct 287 GTGTCTGAAAA--AAATTCAATGTCTTTATGTTCTGTTCTTTTCTGATCTCTCTGAATCT 344
Query 449 ATCTCTATCGCGACAGCCATGGCCGAAGACCCTTCTTTCCTCCCCAAGGATGGTTTTGTC 508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 CTCTCTATCGCGACAGCCATGGCCGAAGACCCTTCTTTCCTCCCCAAGGATGGTTTTGTC 404
Query 509 TTGAAGCTTCCTAAAAAGTCCTCACTTGTATTGAGAATGGTCGTTCTCCTCTTTGTAATG 568
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 405 TTGAAGCTTCCTAAAAAGTCATCACTTGTATTGAGAATGGTCGTTCTCCTCTTTGTAATG 464
Query 569 GTCTGTGCTGTGTACATTTGCTCGATTTGTCTTAAGCAAATAGGAGTTAGCCCAAACTAT 628
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 465 GTCTGTGCTGTGTACATTTGCTCCATTTGTCTTAAGCAAATAGGAGTTAGTCCAAACTAT 524
Query 629 GGTTTCTTGAACGTTGAAGTGTTTGAGAGGCCTTGTCCTGAGCCTAACATTGAACCGTGG 688
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 525 GGTTTCTTGAACGTTGAAGTGTTTGAGAGGCCTTGTCCTGAGCCTAACATCGAACCGTGG 584
Query 689 GACATT-CTATTTGTGCATTACCCTAAACCAAAGACATATAACAGGGATGAATGTTCTTG 747
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GACATTCCT-TTTGTGCATTACCCTAAACCAAAGACATATAACAGGGATGAATGTTCTTG 643
Query 748 CCACCCGGTTAGGTACTTTGCGATTCTCTCGATGCAGAGATCTGGCAGTGGCTGGTTTGA 807
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 644 CCACCCGGTTAGGTACTTTGCGATTCTATCGATGCAGAGATCTGGTAGTGGCTGGTTTGA 703
Query 808 GACTTTGTTAAACAATCATACCAACATAAGCTCGAACGGGGAGATCTTTTCTGTGAAAGA 867
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 704 GACTTTGTTAAACAATCATACTAACATAAGCTCCAACGGGGAGATATTTTCTGTGAAAGA 763
Query 868 TAGGAGGGCTAATGTTTCCACCATTTTTGAGACTCTTGACAAAGTCTATAATCTAGACTG 927
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 764 TAGGAGGGCTAATGTTTCCACCATTTTCGAGACTCTTGACAAAGTCTATAATCTAGACTG 823
Query 928 GTTGAGTAGTGCCTCTAAGAACGAGTGCACTTCTGCTGTTGGCTTCAAGTGGATGCTTAA 987
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 824 GTTGAGTAGTGCCTCTAAGAACGAGTGCACTTCCGCTGTTGGCTTCAAGTGGATGCTTAA 883
Query 988 TCAGGGTTTAATGAAACATCATGAAGAAATAGTAGAATACTTCAAAACCCGAGGCGTCTC 1047
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TCAGGGTCTAATGAAACATCATGAAGAAATAGTAGAATACTTCAAAACCCGAGGCGTCTC 943
Query 1048 TGCGATTTTCCTATTCAGAAAAAACCTATTGCGTCGCATGATATCAGTACTTGCAAACTC 1107
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 944 TGCGATTTTCCTATTCAGAAAAAACCTATTGCGCCGCATGATATCAGTACTCGCAAACTC 1003
Query 1108 TTATGACAGAGATGCTAAGCTATTAAACGGAACTCACAAGTCTCACACCCATTCGGCCAA 1167
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1004 TTATGACAGAGATGCTAAGCTACTAAACGGGACTCACAAGTCTCACACCCATTCGGCCAA 1063
Query 1168 AGAAGCTGAGATATTGGCGGGTTACAAGCCAATGATCAACACAACACTTTTAATAAACGA 1227
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1064 AGAAGCTGAGATATTAGCAGGTTACAAACCAATGATCAACACAACACTTTTAATAAATGA 1123
Query 1228 GCTGAAACAGATTCAAGAAATGACTTTGAAAGCCTTGGA-TTACTTTAATACCACTCGAC 1286
||||| ||||||||||||||||||||||||||| ||| | |||||| |||||||||||||
Sbjct 1124 GCTGAGACAGATTCAAGAAATGACTTTGAAAGCTTTG-ACTTACTTCAATACCACTCGAC 1182
Query 1287 ATATCCTTGTCTACTACGAAGATGTTGTCAAGAACCTCACGAGACTAGACGATGTACAGA 1346
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 ATATCCTTGTCTACTACGAAGATGTTGTCAAGAACCTCACGAGACTAGACGATGTACAGG 1242
Query 1347 AGTTTCTAAAGGTCCCAAAACGTAAGTTAAAGAGTAGGCAAGTGAAGATTCATGGAGGTT 1406
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 AGTTTCTAAAGGTACCAAAACGTAAGTTAAAGAGTAGGCAAGTGAAGATTCATGGAGGTT 1302
Query 1407 CATTGTCACAACATGTACAGAATTGGGAAGAGGTCCAA-ACCACACTTAAAGGAACCAAT 1465
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1303 CATTGTCAAAACATGTACAGAATTGGGAAGAGGTC-ATGACCACACTTAAAGGAACCAAT 1361
Query 1466 TTCGAAAATTTCTTACGCCAAGAATTTTAAATTTTTT--GTACATATCAGAC 1515
|||||||||||||||| ||||||||||||| |||||| ||| |||||||||
Sbjct 1362 TTCGAAAATTTCTTACACCAAGAATTTTAATTTTTTTTTGTATATATCAGAC 1413
> AT2G15730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:6849555-6852143
FORWARD LENGTH=1539
Length=1539
Score = 1044 bits (565), Expect = 0.0
Identities = 924/1094 (84%), Gaps = 38/1094 (3%)
Strand=Plus/Plus
Query 406 TCAATGTCTTTATGTTCTGTTCCTTTCT-GATCTCTCAGTCTCTATCTCT--ATCGCGA- 461
|||||| |||| | |||| | ||||||| ||||||| ||||||||||| |||| |
Sbjct 179 TCAATGCCTTTCTCTTCTCTACCTTTCTAAATCTCTCTCTCTCTATCTCTCCATCG-AAG 237
Query 462 CAGCCATGGCCGAAG-ACCCTTCTTTCCTCCCCAAGGATGGTTTTGTCTTGAAGCTTCCT 520
||||||||| ||| | || | ||| || |||| |||||| |||||||||| |||||||||
Sbjct 238 CAGCCATGGGCGACGAACAC-TCTCTCATCCCAAAGGATAGTTTTGTCTTCAAGCTTCCT 296
Query 521 AAAAAGTC-CTCACTTGTATTGAGAATGGTCGTTCTCCTCTTTGTAATGGTCTGTGCTGT 579
||||| || | ||||||| ||||||| ||| |||||| | ||||| ||||| ||| ||||
Sbjct 297 AAAAAATCAC-CACTTGTGTTGAGAACGGTTGTTCTCTTGTTTGTGATGGTTTGTACTGT 355
Query 580 GTACATTTGCTCGATTTGTCTT-AAGCAAATAGGAGTTAG-CCCAAACT-ATGGTTTCTT 636
|| |||||||| |||||| || |||||||| || ||| | ||| | | ||| |||||
Sbjct 356 TTATATTTGCTCTATTTGT-TTAAAGCAAATTGGTGTT-GTCCC-TAGTGCTGGATTCTT 412
Query 637 GAACGTTGAAGTGTTTGAGAGGCCTTGTCCTGAGCCTAACATTGAACCGTGGGACATT-C 695
||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |
Sbjct 413 GAATGTTGAAGTGTTTGAGAGACCTTGTCCTGAGCCTAACATTCAACCTTGGGACATTCC 472
Query 696 TATTTGTGCATTACCCTAAACCAAAGACATATAACAGGGATGAATGTTCTTGCCA-CCCG 754
| | ||| || || |||||||| ||||| |||| |||||| |||||||| ||| | |||
Sbjct 473 T-TATGTTCACTATCCTAAACCTAAGACCTATAGCAGGGAGGAATGTTCGTGCAATCCC- 530
Query 755 GTTAGGTACTTTGCGATTCTCTCGATGCAGAGATCTGGCAGTGGCTGGTTTGAGACTTT- 813
|||||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 531 GTTAGGTATTTTGCTATTCTCTCGATGCAGAGATCTGGTAGCGGTTGGTTTGAGACTTTA 590
Query 814 GTTAAACAATCATACCAACATAAGCTCGAACGGGGAGATCTTTTCTGTGAAAGATAGGAG 873
|| ||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 591 CTT-AACAATCATACTAACATTAGCTCGAACGGGGAGATCTTTTCGGTTAAAGATAGGAG 649
Query 874 GGCTAATGTTTCCACCATTTTTGAGACTCTT-GACAAAGTCTATAATCTAGACTGGTTGA 932
||||||||| || |||||||||||||| || |||||||| |||||| |||| |||||||
Sbjct 650 GGCTAATGTGTCGACCATTTTTGAGAC-GTTGGACAAAGTATATAATTTAGATTGGTTGA 708
Query 933 GTAGTGCCTCTAAGAACGAGTGCACTTCTGCTGTTGGCTTCAAGTGGATGCTTAATCAGG 992
||||||| |||||||||||||| || ||||||||||| || || ||||||||||||||||
Sbjct 709 GTAGTGCTTCTAAGAACGAGTGTACATCTGCTGTTGGTTTGAAATGGATGCTTAATCAGG 768
Query 993 GTTTAATGAAACATCATGAAGAAATAGTAGAATACTTCAAAACCCGAGGCGTCTCTGCGA 1052
|| |||||||| | |||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 769 GTCTAATGAAAAACCATGAAGAGATAGTAGAATACTTCAAAACCCGAGGCGTGTCTGCTA 828
Query 1053 TTTTCCTATTCAGAAAAAACCTATTGCGTCGCATGATATCAGTACTTGCAAACTCTTATG 1112
||||||| || |||| |||||| ||||| || ||||| ||||| |||||||||||||| |
Sbjct 829 TTTTCCTCTTTAGAAGAAACCTCTTGCGCCGGATGATTTCAGTTCTTGCAAACTCTTACG 888
Query 1113 ACAGAGATGCTAAGCTATTAAACGGAACTCACAAGTCTCACACCCATTCGGCC-AAAGAA 1171
| ||||||||||||| ||||||||||||||||||||| || |||||| || |||||
Sbjct 889 ATAGAGATGCTAAGCCATTAAACGGAACTCACAAGTCCCATGTCCATTCC-CCTAAAGAG 947
Query 1172 GCTGAGATATTGGCGGGTTACAAGCCAATGATCAACACAACACTTTTAATAAAC-GAGCT 1230
||||||||||||||| | ||||| ||| |||||||||| | ||||| ||| | || ||
Sbjct 948 GCTGAGATATTGGCGCGCTACAAACCATTGATCAACACGAGTCTTTTGATAC-CTGATCT 1006
Query 1231 GAAACAGATTCAAGAAATGACTTTGAAAGC-CTTGGATTACTTTAATACCACTCGACATA 1289
||| ||| ||||||| ||||||| ||||| |||| ||||||||| ||||| || ||||
Sbjct 1007 GAAGCAGGTTCAAGAGATGACTTCAAAAGCACTTGC-TTACTTTAACACCACGCGGCATA 1065
Query 1290 TCCTTG-TCTACTACGAAGATGTTGTCAAGAACCTCACGAGACTAGACGATGTACA-GAA 1347
|| || ||||||||||||||||||||||||||| ||| | ||||||||||||||| ||
Sbjct 1066 TC-TTCCTCTACTACGAAGATGTTGTCAAGAACCGCACCAAACTAGACGATGTACAAGA- 1123
Query 1348 GTTTCTAAAGGTCCCAAAACGTA-AGTTAAAGAGTAGGCAAGTGAAGATTCATGGA-GGT 1405
|||||| |||||||| |||| || | ||||||||||||||||||||||||||| | |||
Sbjct 1124 GTTTCTGAAGGTCCCGAAAC-TAGATTTAAAGAGTAGGCAAGTGAAGATTCATC-ATGGT 1181
Query 1406 TCATTGTCACAACATGTACAGAATTGGGAAGAGGTCCAAACCACACTTAAAGGAACCAAT 1465
| ||||||||||| ||||| |||||||||||||| |||| ||||| ||||| ||| |
Sbjct 1182 CCGTTGTCACAACACGTACAAAATTGGGAAGAGGTGCAAAAGACACTGAAAGGGACCGGT 1241
Query 1466 TTCGAAAA-TTTCT 1478
|||||||| |||||
Sbjct 1242 TTCGAAAACTTTCT 1255
> AT4G34419.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G19200.1).
| chr4:16456519-16457225 FORWARD LENGTH=707
Length=707
Score = 597 bits (323), Expect = 1e-169
Identities = 365/385 (95%), Gaps = 3/385 (1%)
Strand=Plus/Plus
Query 7 AGATAGAGAGCTATAGATGGAGTGTTCAAACATGAAACAGCATCAGT---ACGGTTCATA 63
||| |||||| || ||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 63 AGAGAGAGAGATAGAGATGGAATGTTCAAACATGAAACAGCATCAGTACCACGGTTCATA 122
Query 64 CGCAGAGCCAAGGATCTCATTCTCGAGCGGTTTTGCAGCGACTAAGCACGAAATGATCAA 123
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 123 CGCAGAGCCAAGGATCTCATTCTCAAGCGGTTTCGCAGCGACTAAGCACGAAATGATCAA 182
Query 124 GTACAAGGAGGCACCTGTGTCGTCAGATGATTTTGAGTTCGGAGTCGAGAACTTCTCCAT 183
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 183 GTACAAGGAGGCACCAGTGTCGTCAGATGATTTTGAGTTCGGAGTCGAGAACTTCTCTAT 242
Query 184 GACCACAGCAGATGAAATCTTCTTCGATGGCATGATTTTGCCTCTAAAGGAAGAAGTTAA 243
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 243 GACCACAGCAGATGAAATATTCTTCGATGGCATGATCTTGCCTCTAAAGGAAGAAGTTAA 302
Query 244 CACGTCGAAGAGAATGTCAACCCTGAGGGAAGAACTCAGTGAAGAAGATGGTGATTCGCC 303
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 303 CACGACGAAGAGAATGTCAACTCTGAGGGAAGAACTCAGTGAAGAAGATGGTGATTCGCC 362
Query 304 GAGAAGCAAATCTAAAGGAACAAGTGGTTGGTGGAGAGAGAGATTAGGGTTAGGATTCGT 363
|||||||||||| |||||| | ||||||||||||||||||||||||||| ||| ||||||
Sbjct 363 GAGAAGCAAATCAAAAGGATCGAGTGGTTGGTGGAGAGAGAGATTAGGGCTAGCATTCGT 422
Query 364 GAGGTCCAAGAAAGATCACAAGAAA 388
|||||||||||||||||||||||||
Sbjct 423 GAGGTCCAAGAAAGATCACAAGAAA 447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74748611505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5