BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944463
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34410.1 | Symbols: RRTF1 | redox responsive transcription f... 1310 0.0
> AT4G34410.1 | Symbols: RRTF1 | redox responsive transcription
factor 1 | chr4:16451876-16453260 FORWARD LENGTH=1385
Length=1385
Score = 1310 bits (709), Expect = 0.0
Identities = 807/854 (94%), Gaps = 7/854 (1%)
Strand=Plus/Plus
Query 2 AGAAGAAGGAATCGAGATTCGGGTATGCATTATCCTAACAACCGAACCGAATTCGTCGGA 61
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 93 AGAAGAAGGAATCGAGAGTCGGGTATGCATTATCCTAACAACAGAACCGAATTCGTCGGA 152
Query 62 GCTCCAGCCCCAACCCGGTATCAAAAGGAGCAGTTGTCACCGGAGCAAGAGCTTTCAGTT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 GCTCCAGCCCCAACCCGGTATCAAAAGGAGCAGTTGTCACCGGAGCAAGAGCTTTCAGTT 212
Query 122 CTAGTCTCCGCTTTGCAACACGTAATCTCAGGGGAAAACGAAACGGCGCCGTATCAGGGG 181
| ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 213 ATTGTCTCTGCTTTGCAACACGTGATCTCAGGGGAAAACGAAACGGCGCCGTGTCAGGGT 272
Query 182 TTTTCCAGCGACAGCACAGTGATAAGCGCGGGAATGCCTCGGTTGGATTCAGACACTTGT 241
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTTTCCAGTGACAGCACAGTGATAAGCGCGGGAATGCCTCGGTTGGATTCAGACACTTGT 332
Query 242 CAAGTGTGTAGGATCGAAGGATGTCTCGGCTGCAACTACTTTTTCGCGCCAAATCAGAGA 301
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 333 CAAGTCTGTAGGATCGAAGGATGTCTCGGCTGTAACTACTTTTTCGCGCCAAATCAGAGA 392
Query 302 ATTGAAAAG-A--ATCAACAGGAAGAAGAGATTACTAGTAGTAGTAACAGTAGAAGAGAG 358
||||||||| | ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 393 ATTGAAAAGAATCATCAACAAGAAGAAGAGATTACTAGTAGTAGTAACAGAAGAAGAGAG 452
Query 359 AGCTCGCCTGTGGCGAAGAAAGCGGAAGGTGGCGGGAAAATCAGGAAGAGGAAGAACAAG 418
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AGCTCTCCCGTGGCGAAGAAAGCGGAAGGTGGCGGGAAAATCAGGAAGAGGAAGAACAAG 512
Query 419 AAGAATGGTTACAGAGGAGTTAGGCAGAGACCTTGGGGAAAATTTGCAGCTGAGATCAGA 478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 513 AAGAATGGTTACAGAGGAGTTAGGCAAAGACCTTGGGGAAAATTTGCAGCTGAGATCAGA 572
Query 479 GATCCTAAGAGAGCGACACGTGTTTGGCTTGGTACTTTCGAAACCGCCGAGGATGCGGCT 538
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 573 GATCCTAAAAGAGCCACACGTGTTTGGCTTGGTACTTTCGAAACCGCCGAAGATGCGGCT 632
Query 539 CGAGCTTATGATCGAGCTGCGATTGGATTCCGTGGGCCACGGGCTAAACTCAACTTCCCC 598
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 633 CGAGCTTATGATCGAGCCGCGATTGGATTCCGTGGGCCAAGGGCTAAACTCAACTTCCCC 692
Query 599 TTTGTGGACTACACTTCTTCTGTTTCATCTCCTGTGGCTGTTGATGATATTGGAGCAAAT 658
|||||||| ||||| ||||| |||||||||||||| |||| ||||||||| ||||||||
Sbjct 693 TTTGTGGATTACACGTCTTCAGTTTCATCTCCTGTTGCTGCTGATGATATAGGAGCAAAG 752
Query 659 GCTAGTGCAAGCGCGAGCGTGAGTGCCACGGATTCTGTTGAAGCAGAGCAATGGCCCGGA 718
|| ||||||||||| || ||||| ||||| ||||| |||||||||||||||||| ||||
Sbjct 753 GCAAGTGCAAGCGCCAGTGTGAGCGCCACAGATTCAGTTGAAGCAGAGCAATGGAACGGA 812
Query 719 GGAGAAGGAGGGGATTGCAATATGGAGGAGTGGATGAATATGATGATGATGATGGATTTT 778
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 -G-G-AGGAGGGGATTGCAATATGGAGGAGTGGATGAATATGATGATGATGATGGATTTT 869
Query 779 GGGAATGGAGATTCTTCAGATTCAGGGAACACTATTGCTGATATGTTCCAGTGATAGATA 838
|||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 870 GGGAATGGAGATTCTTCAGATTCAGGAAATACAATTGCTGATATGTTCCAGTGATAAAT- 928
Query 839 GAGCTCTTTCTTGT 852
||||||||||||||
Sbjct 929 GAGCTCTTTCTTGT 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5