BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944465
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34400.1 | Symbols: | AP2/B3-like transcriptional factor fa... 824 0.0
> AT4G34400.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr4:16445208-16447773 FORWARD LENGTH=1486
Length=1486
Score = 824 bits (446), Expect = 0.0
Identities = 702/819 (86%), Gaps = 44/819 (5%)
Strand=Plus/Plus
Query 1 GATCCAACATCTCCTCTTCAATGGCT-GCCACTGATTTCGTTTTCCCTCCACGTTTCTTC 59
||||||| || |||||||||||||| | || ||||||| |||||||||||||||||
Sbjct 108 GATCCAAGATGGCCTCTTCAATGGCTAG-CAATGATTTCCAGCTCCCTCCACGTTTCTTC 166
Query 60 AAAGTTTTTGTCTCCCACTTCACCTCAGA-TTCCATGATGCTCCCAATTGCCTACTACGG 118
| ||||| |||||||| |||| |||||| || |||| || ||||| || |||||||||
Sbjct 167 ACTGTTTTCGTCTCCCATTTCAGCTCAGAGTT-CATGGTGATCCCAGTTTCCTACTACGA 225
Query 119 TCATC-TTCCA-AGTCGTTTGCACAAAACGGTGATTCTCCGAGGACCTGGTGGATGCTCT 176
||| | ||||| | |||||| | ||| || |||||||||||||||||||||||||||||
Sbjct 226 TCA-CATTCCACA-TCGTTTCCCCAAGACTGTGATTCTCCGAGGACCTGGTGGATGCTCC 283
Query 177 TGGAATGTAGCCAC-AACGATAAATGAAAAAGAAGTGCATTTCTCACAAGGATGGGCCAA 235
||||| ||||| || | |||||| || | ||||||| ||| |||||||||||| ||||
Sbjct 284 TGGAAGGTAGCGACGGA-GATAAAGGATGATGAAGTGCTTTTTTCACAAGGATGGCCCAA 342
Query 236 ATTCGTT-GAGGATAACACTCTTAGCGATGGAGACATTTTGACCTTTGTGTATAATGGAG 294
||| ||| | |||||| ||||||| |||||||||| |||||||||||| ||||||||||
Sbjct 343 ATTTGTTCG-GGATAATACTCTTAACGATGGAGACTTTTTGACCTTTGCCTATAATGGAG 401
Query 295 AC-CACGTATTCGAGGTCAGTATCTATCGCGGCTACGATGCATGTAAAGAGATTAGCGCA 353
| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 402 -CTCACATATTCGAGGTCAGTATCTTTCGCGGCTACGACGCATGTAAAGAGATTAGCGAA 460
Query 354 GTCACTGAAGTGGAAGAGGACA-AAGAAGACAGTGTTTTTTCTCTGAGCAGTGAAGACA- 411
||||||||| |||||||||| | |||||||||||||| | |||||||||||||||||||
Sbjct 461 GTCACTGAATTGGAAGAGGA-AGAAGAAGACAGTGTTATATCTCTGAGCAGTGAAGACAC 519
Query 412 ATGACACTTGTTCTCAATCTGTGATGAAGAACACGA-TCCCGGAAGGAAGAGACAAAGGA 470
| |||||| || || |||||| ||||||||| || | |||||||||| ||||||||||||
Sbjct 520 A-GACACTGGTGCTAAATCTGAGATGAAGAATAC-AGTCCCGGAAGGCAGAGACAAAGGA 577
Query 471 AAGTCAAAAGTGGAAGTTGTGGGGGATCCTGATGAC---GA--A-GAGGATAGTGTTTAT 524
|||||||||||||||||||||| |||| |||||||| || | |||||||||||||||
Sbjct 578 AAGTCAAAAGTGGAAGTTGTGGAGGATTCTGATGACGATGAGGAGGAGGATAGTGTTTAT 637
Query 525 TCTGCAAGCGGTGAAGAAACAGAGACAGACACTGATTCTGAATTCCAGGTGGCCAAGACA 584
|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 638 TCTGAAAGCAGTGAAGAAACAGAGACAGACACTGATTCTGAATTCAAGGTGGCCAAGCCA 697
Query 585 ACAATACCAAAAAGCAAGAAGAAAGGGAAGAAGAAAGAACAGGTTGTGGAGTCTTCTGAT 644
||||||||||||||| |||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 698 ACAATACCAAAAAGCCAGAAGAAAGGAAAGAAGAAAGAACAAGTTGTGGAGTCCTCTGAT 757
Query 645 GA--AG-A---C-A-GTG-A---CAGTGACAGTGATTACATCGAAACGTTTGGTCAATTG 692
|| || | | | | | | |||||||||||||||||| ||||||||||||||||||
Sbjct 758 GACGAGGAAGACGAAGAGGAGGACAGTGACAGTGATTACATTGAAACGTTTGGTCAATTG 817
Query 693 GATATTGAAGAGAATTCCAACAGTGAGGAGGATAGTTCTTATGCTCCAGATGACGAAGGC 752
||||||||||||||||||| |||||||||||| |||||||||||||| ||| | |||| |
Sbjct 818 GATATTGAAGAGAATTCCATCAGTGAGGAGGACAGTTCTTATGCTCCTGATAAAGAAGAC 877
Query 753 ACATCCACT---TGT---GTCAAACCAAAGGTGGCAAAT 785
||| ||||| | | |||||||||||||| ||||||
Sbjct 878 ACAGCCACTGCCTCTTTTGTCAAACCAAAGGTTGCAAAT 916
Score = 501 bits (271), Expect = 6e-141
Identities = 350/389 (90%), Gaps = 2/389 (1%)
Strand=Plus/Plus
Query 775 AGGTGGCAAATG-TGAAGAGGAAAGTCGAGCCTAAGATCAAAAATCCTGAGACATATCTG 833
||| |||||| | || || ||||||||| || | |||||| |||||||||| ||| ||
Sbjct 942 AGGCGGCAAA-GAAGAGGAAGAAAGTCGATCCCATGATCAAGAATCCTGAGAGATACCTC 1000
Query 834 GATGATCCAAAGAATATTCATTTCGAGACAAACGTGAAGAATAGATTATACGAGCTGTTG 893
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1001 GATGATCCTAAGAATATCCATTTCGAGACAAACGTGAAGAATAGGTTATACGAGCTGTTG 1060
Query 894 GTTCATGCACAACTGGTGAAAGACTATTGCTTGAAGTTTGGAGACCACGTTTACTACATC 953
|||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||
Sbjct 1061 GTTCATGCACAACTGGTGAAAGACTATTGCTTGAGGTTTGGAGACTATGTTAACTACATC 1120
Query 954 GACAGAATCGGGAAACTAAAAGCTAAAACAGCAAAATGGAAGGATCAGCGTGTGTGTATC 1013
||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1121 GACAGGTTCGGGAAACTAAGTGCTAAAACAGCCAAATGGAAGGATCAGCGTGTTTGTATC 1180
Query 1014 AAAAAATGGATGCGCATATGCGATAGGAACAAATTGAAGAAAGAAGACCGCATTTTGTGT 1073
|||| |||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 1181 AAAAGATGGATGCGCATATGCAAGAGGAACAAGTTGAAGAAAGAAGACCGCATTTTGTGT 1240
Query 1074 GAGCTCTTGCGCAAGGGAACTTTTGTGTACGCAATCAAACTCCACATCATCCGCGGAAAA 1133
||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||
Sbjct 1241 GAGCTCTTGCGCAAGGGAACTTTCGTTTACGCAATCAAACTCCATGTCATCCGCGGTAAG 1300
Query 1134 AATCTGTAGACGCTATCAGTGTGAGTAGA 1162
|||||||||||||| |||| ||||||||
Sbjct 1301 GATCTGTAGACGCTAGCAGTATGAGTAGA 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5