BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944477
Length=2400
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34280.1 | Symbols: | transducin family protein / WD-40 rep... 3808 0.0
> AT4G34280.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr4:16406998-16410785 FORWARD LENGTH=2579
Length=2579
Score = 3808 bits (2062), Expect = 0.0
Identities = 2289/2399 (95%), Gaps = 13/2399 (1%)
Strand=Plus/Plus
Query 5 ATCTTAAGATTTGATTGAATGGCTACGCTCACTGAAATAGCAACCCTTGAGGAGAAGTAT 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATCTTAAGATTTGATTGAATGGCTACGCTCACTGAAATAGCAACCCTTGAGGAGAAGTAT 128
Query 65 ATTGAATTATGCAAGAAGCATGGCATCCTACCCAACACTGCCGTTTTATCTGCTTTCTTT 124
|| ||||| ||||||| |||||| |||||||||||||||||| |||||||||||||||||
Sbjct 129 ATCGAATTGTGCAAGATGCATGGAATCCTACCCAACACTGCCATTTTATCTGCTTTCTTT 188
Query 125 GAGGCGGAGGTTAAAAAGTCAAGGAATCAAAGATGTATCATGAACCTTTATGTGGATAGA 184
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 189 GAGGCGGAGGTTAAAAAGTCAAGGAATCAAAGATGCATTATGAACCTTTACGTGGATAGA 248
Query 185 GTGAAGTACGATGACTATCACCCGCTTCTCGAGTTATGCAATGAGATCAACACATCTGAG 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GTGAAGTACGATGACTATCTCCCGCTTCTCGAGTTATGCAATGAGATCAACACATCTGAG 308
Query 245 GTACAAGGAATAGATCTCTTTGTGAGATCCTCTTGTTCTTTAGAAGATCATTATGCATTG 304
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||
Sbjct 309 GTACAAGGAATAGATCTATTTGTGAGATCCGCTTGTTCGTTAGAAGATCATTATGCATTG 368
Query 305 TCCTTAATTCGTTCTGTCAATCAAAAACTCCGAGTTGTTCATCTACATGACTCTTTCGGG 364
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CCCTTAATCCGTTCCGTCAATCAAAAACTCCGAGTTGTTCATCTACATGACTCTTTCGGG 428
Query 365 AAAAACTTCTGGCGGGACGTTTTCTTTCAAGGTTTGAGCTGCAAAGTTTTGAATGTGAGG 424
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 429 AAAAACTTCTGGCAGGACGTTTTCTTTCAAGGTTTGAGCTGCAAAGTGTTGAATGTGAGG 488
Query 425 TCTATGCATTTCCATAAGCTTAACATCGTAGGAGAGTTCACACAGCTGCACACCCTTATA 484
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TCTATGCATATCCATAAGCTTAACATCGTAGGAGAGTTCACACAGCTGCACACCCTTATA 548
Query 485 CTCGATAAGAACCGTATAGTTGGTTTTGGGGAAGACTGTTTTTCTTGCATGCCCAAATTG 544
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 549 CTCGATAAGAACCGTATAGTTGGTTTTGGAGAAGACTGTTTTTCTTGCATGCCCAAATTG 608
Query 545 ACATATCTTTCGATGTGTGACACTCTAGTGTCAGATCTTTGGACATCAGCTGCTGCTCTC 604
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 ACATATCTTTCCATGTGTGACACTCTAGTGTCAGATCTTTGGACATCAGCTGCTGCTCTC 668
Query 605 TTGAAACTCCCTTCTCTTAAGGAGCTCCGGTTTCAAATTTGGATCTCTTGCAGTGATTCT 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TTGAAACTCCCTTCTCTTAAGGAGCTCCGGTTTCAAATTTGGATCTCTTGCAGTGATTCT 728
Query 665 AGCCCAC-CAAAATCACAGTCATCGCCATCATCATCATCTACCGGAG-ATGATAAAAACA 722
||||||| ||| ||| ||||||| ||||||||||| | ||| || |||||| |||||
Sbjct 729 AGCCCACTCAAT-TCAGAGTCATCACCATCATCATC-T--ACCA-AGGATGATATAAACA 783
Query 723 CATTTATTGAATCAGACCCTCCCATTGAAGCAGATATTTGGGACGTTGTTGAACAGATGG 782
||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||
Sbjct 784 CATTTATTGAATCAGACCCTCCCGTTGAAGCAGATATGTGGGACGTTGCTGAACAGATGG 843
Query 783 ATCCTAGTTTACCTGTTGACGAGACTCTTCATAGTATGGATTTCTCGTATAAAATTCCTG 842
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 844 ATCCTAGTTTACCTGTCGAAGAGACTCTTCATAGCATGGATTTCTCGTATAAAATTCCTG 903
Query 843 AGCAAGATGATTTGGATTCACGTATCTCCGTGTCTTCAGAGTTGAATGGAGAAGTACTCA 902
||||||||||||||||||||| | |||| |||||| ||| ||||||||||||||||||||
Sbjct 904 AGCAAGATGATTTGGATTCACATGTCTCTGTGTCTGCAGGGTTGAATGGAGAAGTACTCA 963
Query 903 CGAGGGAAAAGGTTAGGAGAGGGAAAATGCCGTACCAACCCAAAGATGTTTCACCCGTTG 962
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TGAGGGAAAAGGTTAGGAGAGGGAAAATGCCGTACCAACCCAAAGATGTTTCACCCGTTG 1023
Query 963 A-ATCATTCACAAGGCAATTTGGGAATGTTGGGTTGAAATATATTTCCTCTAAAGCATCA 1021
| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1024 ATA-CGTTCACAAGGCAATTTGGGAATGTTGGGTTGAAATATATATCCTCTAAAGCATCA 1082
Query 1022 CCGATATGTTCTGAAAAGCATTATAGGATGTACATGATAAACTCTCTGCCCAAATTACAA 1081
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1083 CCGATCTGTTCTGAAAAGCATTACAGGATGTACATGATAAACTCTCTGCCCAAATTACAA 1142
Query 1082 GTGTTGGACAATTTGGCTATAAGAAAGAGTGATAGAGACAGGGCCTTTGAAACATATTCT 1141
||||||||||||||||| || ||||||||||||||||| | |||| ||||||||||||||
Sbjct 1143 GTGTTGGACAATTTGGCCATCAGAAAGAGTGATAGAGATAAGGCCATTGAAACATATTCT 1202
Query 1142 GCAAACTTTGAGGACTTACCATACAAGAGAAAGAAGGAAAGTGTAGTTAGAGTCCTTGAG 1201
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GCAAACTTTGAGGACTTACCGTACAAGAGAAAGAAGGAAAGTGTAGTTAGAGTCCTTGAG 1262
Query 1202 AAGCGGGAAACAAGATCAAGCAAAGGGATATCTCAGAATTCCTATAAAAGATCGCTTTGT 1261
|| || |||| |||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1263 AACCGTGAAAAAAGATCAAGCAAGGGGAAATCTCAGAATTCCTATAAAAGATCGCTTTGT 1322
Query 1262 GCAGCTAAAATGGGATCGTCTGCTTCGCCTCTCTTGCATTCACTTCCTTTTTTGAGTAGT 1321
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GCAGCTAAAATGGGATCGCCTGCTTCGCCTCTCTTGCATTCACTTCCTTTTTTGAGTAGT 1382
Query 1322 AGGATTCATCAGGAAGATGATAATAGTAGATTAAGTCCAAGGCAGTTTGAGTACCATCCA 1381
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1383 AGGATTCAGCAGGAAGATGATAATAGTAGATTATGTCCAAGGCAGTTTGAGTATCATCCA 1442
Query 1382 CTAGATCCTAGCCTTATGGTATTTGGGACTTTGGATGGCGAGGTAGTTGTTCTCAATCAC 1441
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1443 CTAGATCCTAGCCTAATGGTATTTGGGACTTTGGATGGCGAGGTGGTTGTTCTCAATCAC 1502
Query 1442 GAAAGTGGGAAAATTGTCCGTTACATCCCATCTCATGGATCTCAAAGTACCATCTTGGGA 1501
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1503 GAAAGTGGGAAAATTTTCCGTTACATCCCATCTAATGGATCTCAAAGTACCATCTTGGGA 1562
Query 1502 CTTTGCTGGCTCAAGATGTATCCATCTATGGTTATAGCTGGCTCAGCCAATGGCTCTTTG 1561
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1563 CTTTGTTGGCTCAAGATATATCCATCTATGGTTATAGCTGGCTCAGCCAATGGCTCATTG 1622
Query 1562 AAGCTGTACGACATCCAAAAAGCGTCATCAACGGTTGCTACTAGCAGTCATGCCACTTCT 1621
||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||
Sbjct 1623 AAGCTGTACGACATCCAAAAAGCGTCATCCACGGTTACTACTAGCAGTCATTCCACTTCT 1682
Query 1622 TCTGGTTCTGTCACTTTTGATGAGTTTGACCAATTAACTTCGGTTCATGCTAATTCGACG 1681
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1683 ---GGTTCTGTCACTTTTGATGAGTTTGACCAATTAACGTCGGTTCATGCTAATTCGACG 1739
Query 1682 GACCAACTATTTCTTGCTAGCGGATACTCGAGGGATGTTGCTTTGTATGACATTGGTAGG 1741
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1740 GACCAACTATTTCTTGCTAGCGGATACTCGAAGGATGTTGCTTTGTATGACATTGGTAGG 1799
Query 1742 GGAACACGCCTACAGGTTTTTGCTAATATGCATCAAGAGCATATTAACGTGGTGAAATTT 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GGAACACGCCTACAGGTTTTTGCTAATATGCATCAAGAGCATATTAACGTGGTGAAATTT 1859
Query 1802 TCGAACCATTCCCCGTTCCTTTTTGCGACTTCTTCTTTCGATAAAGATGTTAAGCTATGG 1861
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1860 TCGAACCATTCCCCGTTTCTTTTTGCGACTTCTTCTTTCGATAAAGATGTTAAGCTTTGG 1919
Query 1862 GATTTGAGACAAGAGCCATCCCGACCATGCTACACCGCTTCTAGTACCAAAGGAAATGTG 1921
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1920 GATTTGAGACAAGAGCCATCCCGACCATGCTACACCGCTTCTAGTACGAAAGGAAATGTA 1979
Query 1922 ATGGTTTGCTTTTCTCCAGATGATCGTTATCTTCTAGCATCAGCCGTGGACAATGAGGTG 1981
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1980 ATGGTTTGCTTTTCTCCAGATGATCGTTATCTTCTAGCATCAGCCGTAGACAACGAGGTG 2039
Query 1982 AGGCAGCTTTTGACAGTTGATGGAAGGCTTCATCTGAACTTTGAGATAGTCCCAAGAGTA 2041
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 AGGCAGCTTTTGACAGTAGATGGAAGGCTTCATCTGAACTTTGAGATAGTCCCAAGAGTA 2099
Query 2042 AGCTCAATGAACTATACCCGATCATACTACATGAATGGTAATGACTACATCATCAGTGGA 2101
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2100 AGCTCGATGAACTATACTCGATCATACTACATGAATGGTAATGACTACATCATAAGTGGA 2159
Query 2102 AGCTGCGATGAAAATGTGATCCGTGTTTGTTGTGCTCAAACTGGAAGGCGCCTTAGGGAT 2161
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2160 AGCTGCGATGAGAATGTGATCCGTGTTTGTTGTGCTCAAACTGGAAGACGACTTAGGGAT 2219
Query 2162 GTAACTCTAGAGGGAAACGGCTCGGACTTTTCCATGATGTTTGTTCAGTCTCTACGCGGT 2221
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2220 GTAACTCTAGAGGGAAACGGCTCGGACTTTTCCATGATGTATGTTCAGTCTCTACGCGGT 2279
Query 2222 GACCCCTTCAGGGATTTTAACATGAGTGTTTTAGCTGCTTACACACGGTCAAGCTCAGTG 2281
||||||||||||||||| || |||||||| || ||||| ||| |||||||||||||| |
Sbjct 2280 GACCCCTTCAGGGATTTCAATATGAGTGTATTGGCTGCGTACGCACGGTCAAGCTCACTT 2339
Query 2282 TCTGAAATAGTCAAGGTGAATTTGTTAGCGTCAAGAGATTCTACAGAAGAACAATCTCAT 2341
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2340 TCTGAAATAGTCAAGGTGAATTTGTTAGCGTCAAGAGATTCTACAGCAGAAGAATCTCAT 2399
Query 2342 GGTCTACGTTCTTACCCCTCAAATAGCATGGGAGGCTGATGATTAAAACCAAATGAGAG 2400
||||| ||||| ||||| |||| |||||||||||||||||||| ||||||||| |||||
Sbjct 2400 GGTCTCCGTTCCTACCCTTCAAGTAGCATGGGAGGCTGATGAT-AAAACCAAAAGAGAG 2457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119176093830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5