BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944483
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34240.1 | Symbols: ALDH3I1, ALDH3 | aldehyde dehydrogenase ... 2617 0.0
> AT4G34240.1 | Symbols: ALDH3I1, ALDH3 | aldehyde dehydrogenase
3I1 | chr4:16389620-16392824 FORWARD LENGTH=2025
Length=2025
Score = 2617 bits (1417), Expect = 0.0
Identities = 1603/1694 (95%), Gaps = 8/1694 (0%)
Strand=Plus/Plus
Query 1 TTTTTAACTGAACCCAAGTCATGACGAAGCCTCTAGAGATGAATC--A-T---GCCCTTT 54
|||||||||||||||||||||||||||||| ||||||||| |||| | | ||||||
Sbjct 162 TTTTTAACTGAACCCAAGTCATGACGAAGCTTCTAGAGATTAATCATATTCAAACCCTTT 221
Query 55 GTTTTGCCAAGGGTTTTTCTCGTACCAGATTAAATGTTGCAACTTCACCCTTTCTGATAT 114
||||||||||||||||||||| | ||||||||||||||||||||||||| |||| |||||
Sbjct 222 GTTTTGCCAAGGGTTTTTCTCCTGCCAGATTAAATGTTGCAACTTCACCTTTTCGGATAT 281
Query 115 CTCGTGGTGGTGGTGGTGGATATTGCAGCAATACTTGTATCCCTTATCGCTTGAAATTTA 174
||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 282 CTCGTCGTGGTGGTGGTGGATATTGCAGCAATGCTTGTATCCCTTATCGGTTGAAATTTA 341
Query 175 CTTGCTATGCAACACTATCTGCTGTGGTAAAGGAGCAAACATCAG-CTTTTGATGGAAAA 233
|||| ||||||||||||||||||||||||||||||||| |||||| |||| | |||||||
Sbjct 342 CTTGTTATGCAACACTATCTGCTGTGGTAAAGGAGCAAGCATCAGACTTTAG-TGGAAAA 400
Query 234 GAAGCAGCTTTGCTTGTTGATGAGCTCAGAAGCAACTTTAACACCGGTAGAACAAAGAGC 293
||||||||||||||||| |||||||||||||||||||| ||| | || ||||| ||||||
Sbjct 401 GAAGCAGCTTTGCTTGTAGATGAGCTCAGAAGCAACTTCAACTCTGGCAGAACGAAGAGC 460
Query 294 TATGAGTGGAGAATTTCTCAGCTTCAAAGCATTGCTAGGATGATTGATGAGAAGGAGAAA 353
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 461 TACGAGTGGAGAATTTCTCAGCTTCAAAACATTGCTAGGATGATTGATGAGAAGGAGAAA 520
Query 354 TGTATCACCGAAGCTTTGTATCAAGACCTTTCCAAGCCTGAGCTTGAAGCTTTTCTAGCT 413
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 521 TGCATCACCGAAGCTTTGTATCAAGATCTTTCTAAGCCTGAGCTTGAAGCTTTTCTAGCT 580
Query 414 GAGATTTCGAATACAAAATCATCCTGTATGCTTGCAATCAAAGAGTTGAAGAATTGGATG 473
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 581 GAGATTTCGAATACAAAATCATCCTGTATGCTTGCAATCAAAGAGTTAAAGAACTGGATG 640
Query 474 GCTCCAGAAACGGTCAAAACTTCTGTGACGACATTTCCCTCGTCTGCAGAAATAGTCTCA 533
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 641 GCTCCAGAAACGGTCAAAACTTCTGTGACAACATTTCCCTCGTCTGCACAAATAGTCTCA 700
Query 534 GAGCCGCTAGGAGTTGTTTTGGTTATCTCAGCCTGGAATTTCCCTTTCTTATTGTCTGTC 593
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 701 GAACCGCTTGGAGTTGTTTTGGTTATTTCAGCCTGGAATTTCCCTTTCTTATTGTCTGTC 760
Query 594 GAGCCAGTCATTGGAGCTATTGCAGCTGGTAATGCGGTTGTGCTTAAACCTTCTGAAATC 653
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 761 GAGCCAGTCATTGGAGCTATTGCAGCTGGTAATGCGGTTGTGCTAAAACCTTCTGAAATT 820
Query 654 GCTCCAGCAGCATCTTCTCTTTTAGCAAAGTTGTTCAGTGAATACTTGGACAATACAACA 713
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 821 GCTCCAGCAGCATCTTCTCTTTTAGCAAAGTTGTTTAGTGAATACTTGGACAATACAACA 880
Query 714 ATCCGAGTTATAGAGGGAGGAGTCCCTGAAACAACAGCACTACTGGATCAAAAATGGGAA 773
||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 881 ATCAGAGTTATCGAGGGAGGAGTCCCTGAAACAACGGCACTACTGGATCAAAAATGGGAC 940
Query 774 AAGATCTTCTTCACTGGTGGAGCAAGAGTTGCTCGCATTATAATGGCTGCAGCTGCGAAA 833
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 941 AAGATCTTTTTCACTGGTGGAGCAAGAGTTGCTCGCATTATAATGGCTGCGGCTGCGAGA 1000
Query 834 AATCTTACTCCAGTGGTTCTCGAACTTGGTGGAAAGTGCCCAGCTCTTGTTGATTCAGAT 893
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1001 AATCTTACTCCAGTGGTTCTCGAACTTGGTGGGAAGTGCCCAGCTCTTGTTGATTCAGAT 1060
Query 894 GTTAATCTACAAGTAGCTGCTAGGAGGATCATAGCAGGGAAATGGGCTTGTAACAGTGGA 953
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1061 GTTAATCTACAAGTGGCTGCTAGGAGGATCATTGCAGGGAAATGGGCTTGTAACAGTGGA 1120
Query 954 CAGGCTTGCATTGGCGTCGATTACGTGATCACAACAAAGGATTTTGCATCAAAATTGATA 1013
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 CAGGCTTGCATTGGTGTTGATTACGTGATCACAACAAAGGATTTTGCATCAAAATTGATA 1180
Query 1014 GATGCTCTGAAGACTGAACTGGAGACATTTTTTGGGCAAAACGCATTAGAATCAAAGGAC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GATGCTCTGAAGACTGAACTGGAGACATTTTTTGGGCAAAACGCATTAGAATCAAAGGAC 1240
Query 1074 CTGTCACGGATTGTGAACTCTTTCCACTTCAAACGGTTGGAGAGTATGTTAAAAGAGAAT 1133
||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1241 CTGTCGCGGATTGTGAACTCTTTCCACTTCAAAAGGTTGGAAAGTATGTTAAAAGAGAAT 1300
Query 1134 GGAGTCGCCAACAAAATTGTTCATGGTGGCCAAACAACCGAAGATAAACTAAAAATATCT 1193
||||| ||||||||||||||||||||||||| || ||||||||||||||| ||||||||
Sbjct 1301 GGAGTAGCCAACAAAATTGTTCATGGTGGCCGAATAACCGAAGATAAACTTAAAATATCA 1360
Query 1194 CCAACGATTCTACTGGATGTGCCAGAAGCATCTTCCATGATGCAGGAAGAGATATTTGGA 1253
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1361 CCAACAATACTACTGGATGTGCCTGAAGCATCTTCCATGATGCAGGAAGAGATATTTGGA 1420
Query 1254 CCTTTACTTCCCGTAATTACGGTGCAAAAGATTGAAGATGGCTTTCAGGTTATACGTTCA 1313
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1421 CCTTTACTTCCCATAATTACGGTACAAAAGATTGAAGATGGCTTTCAGGTTATACGTTCA 1480
Query 1314 AAGCCAAAGCCTCTAGCAGCGTATCTGTTCACAAACAGCACAGAGTTGCAGAAACAATTC 1373
|||||||||||| ||||||||||||| |||||||||| || ||||||| |||||||||||
Sbjct 1481 AAGCCAAAGCCTTTAGCAGCGTATCTCTTCACAAACAACAAAGAGTTGGAGAAACAATTC 1540
Query 1374 GTGCAGAACGTATCTGCAGGAGGAATGACCATCAATGACACTGTCTTACACGTAACTGTA 1433
|||||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1541 GTGCAGGACGTATCAGCAGGAGGAATTACCATCAATGACACTGTCTTACACGTGACTGTA 1600
Query 1434 AAAGATTTGCCATTTGGTGGGGTAGGGGAGAGCGGGATCGGTGCTTACCACGGGAAATTC 1493
|||||| |||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 1601 AAAGATCTGCCATTTGGTGGGGTTGGGGAGAGTGGGATCGGTGCTTACCATGGGAAATTC 1660
Query 1494 TCGTATGAGACGTTTAGCCATAAGAAAGGAGTACTTTACCGGAGCTTTTCAGGGGACGCG 1553
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1661 TCGTATGAGACGTTTAGCCATAAGAAAGGAGTTCTTTACCGGAGCTTTTCAGGGGACGCG 1720
Query 1554 GATCTAAGATATCCTCCTTACACACCCAAAAAGAAGATGGTTCTGAAAGCTTTGATCTCT 1613
||||| |||||||||||||||||||| |||||||||||||| || || |||||| |||||
Sbjct 1721 GATCTTAGATATCCTCCTTACACACCAAAAAAGAAGATGGTGCTTAAGGCTTTGCTCTCT 1780
Query 1614 TCAAACATATTTGCTGCTATCTTGGCTTTCTTTGGGTTATCTAAAGAGTCATGATCACAT 1673
||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1781 TCAAACATATTTGCTGCCATTTTGGCTTTCTTTGGGTTCTCTAAAGACTCATGATCACAT 1840
Query 1674 GTTATAATCACTGA 1687
||||||||||||||
Sbjct 1841 GTTATAATCACTGA 1854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83383105245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5