BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944486
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34230.1 | Symbols: CAD5, ATCAD5, CAD-5 | cinnamyl alcohol d... 1797 0.0
AT3G19450.1 | Symbols: CAD4, ATCAD4, CAD, CAD-C | GroES-like zi... 662 0.0
> AT4G34230.1 | Symbols: CAD5, ATCAD5, CAD-5 | cinnamyl alcohol
dehydrogenase 5 | chr4:16386727-16388722 REVERSE LENGTH=1301
Length=1301
Score = 1797 bits (973), Expect = 0.0
Identities = 1069/1115 (96%), Gaps = 8/1115 (1%)
Strand=Plus/Plus
Query 4 AGAAAGAATCATC-AAAAATGGGAATAATGGAGGCAGAGAGGAAAACAACAGGCTGGGCT 62
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 39 AGAAAGAATCATCAAAAAATGGGAATAATGGAGGCAGAGAGGAAAACAACAGGCTGGGCT 98
Query 63 GCAAGAGATCCATCTGGGACT-CTCTCTCCTTACACTTACACTCTTAGAGAGACTGGACC 121
|| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 99 GCCAGAGACCCATCTGGGA-TCCTCTCTCCTTACACTTACACTCTTAGAGAGACTGGACC 157
Query 122 AGAGGATGTGAACATAAGAATCATTTGCTGTGGAATCTGCCACACTGATCTTCATCAAAC 181
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 158 AGAGGATGTGAACATAAGAATCATTTGCTGTGGAATCTGCCACACCGATCTTCATCAAAC 217
Query 182 CAAAAATGATCTTGGCATGTCTAACTACCCCATGGTTCCAGGGCATGAAGTGGTAGGTGA 241
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 218 TAAAAATGATCTTGGCATGTCTAATTACCCCATGGTTCCTGGGCATGAAGTGGTAGGGGA 277
Query 242 AGTGGTGGAGGTTGGATCAGATGTGAGCAAGTTCACTGTAGGTGACATAGTTGGAGTTGG 301
||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 278 AGTAGTGGAGGTGGGATCAGATGTGAGCAAGTTCACCGTAGGGGACATAGTTGGAGTTGG 337
Query 302 TTGCCTCGTTGGATGTTGCGGAGGTTGTAGCCCTTGCGAGAGAGATCTGGAACAGTATTG 361
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 338 TTGCCTCGTTGGATGTTGCGGAGGTTGTAGCCCCTGCGAGAGAGATCTGGAACAGTATTG 397
Query 362 TCCAAAGAAGATTTGGAGCTACAACGATGTTTACATCGATGGTCAACCTACACAAGGCGG 421
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 398 TCCAAAGAAGATTTGGAGCTACAATGATGTTTACATCAATGGTCAACCTACACAAGGCGG 457
Query 422 GTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGGC 481
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 458 CTTCGCTAAAGCCACCGTCGTTCACCAAAAGTTTGTGGTCAAGATTCCAGAAGGAATGGC 517
Query 482 GGTTGAGCAGGCTGCGCCACTACTGTGCGCTGGTGTGACGGTGTATAGTCCACTGAGCCA 541
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 518 GGTTGAGCAGGCTGCGCCGCTACTGTGCGCTGGTGTGACTGTGTACAGTCCACTGAGCCA 577
Query 542 CTTCGGTCTGAAACAACCAGGCCTAAGAGGAGGCATACTAGGGTTAGGTGGAGTTGGTCA 601
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 578 CTTTGGTCTGAAACAACCAGGCCTAAGAGGAGGTATACTAGGGTTAGGTGGAGTCGGTCA 637
Query 602 CATGGGTGTGAAAATAGCCAAAGCAATGGGTCACCATGTGACTGTCATTAGCTCATCAAA 661
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 638 CATGGGTGTGAAAATAGCCAAAGCAATGGGTCACCATGTGACTGTCATAAGCTCATCAAA 697
Query 662 CAAGAAGAGAGAAGAGGC-TCTGCAAGACCTTGGAGCTGATGATTACGTGATCGGATCTG 720
|||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |
Sbjct 698 CAAGAAGAGAGAAGAGGCAT-TGCAAGATCTTGGAGCTGATGATTACGTGATCGGATCCG 756
Query 721 ACCAAGCAAAGATGAGCGAATTGGCTGATTCGTTGGATTACGTAATTGACACGGTTCCTG 780
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 757 ACCAAGCGAAGATGAGCGAATTGGCTGATTCGTTGGATTACGTAATTGACACGGTGCCTG 816
Query 781 TTCATCACGCACTTGAGCCTTATTTGTCTCTGCTTAAGCTTGATGGGAAGCTTATTCTCA 840
||||||| ||||||||||| |||||||||||||||||||||||||| || || |||||||
Sbjct 817 TTCATCATGCACTTGAGCCATATTTGTCTCTGCTTAAGCTTGATGGTAAACTCATTCTCA 876
Query 841 TGGGAGTTATCAACAATCCCTTGCAGTTTCTTACTCCTCTGCTTATGCTTGGGAGGAAAG 900
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 877 TGGGAGTTATCAACAATCCATTACAGTTTCTCACTCCTCTGCTTATGCTTGGGAGGAAAG 936
Query 901 TGATAACGGGGAGCTTCATAGGGAGCATGAAGGAGACAGAGGAGATGCTTGAGTTCTGTA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TGATAACGGGGAGCTTCATAGGGAGCATGAAGGAGACAGAGGAGATGCTTGAGTTCTGTA 996
Query 961 AAGAAAAGGGATTGAGTTCGATCATCGAAGTTGTGAAGATGGATTATGTTAACACTGCGT 1020
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 997 AAGAAAAGGGTTTGAGTTCGATTATCGAAGTTGTGAAGATGGATTATGTTAACACTGCGT 1056
Query 1021 TTGAGAGACTCGAGAAGAACGATGTGCGTTATAGGTTCGTCGTTGATGTCGAAGGAAGCA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TTGAGAGACTCGAGAAGAACGATGTGCGTTATAGGTTCGTCGTTGATGTCGAAGGAAGCA 1116
Query 1081 ATTTCGACGCTTGA-ATTCATGAAAACTCGAGGCT 1114
|| ||||||||||| || ||||||| |||||||||
Sbjct 1117 ATCTCGACGCTTGATAT-CATGAAA-CTCGAGGCT 1149
> AT3G19450.1 | Symbols: CAD4, ATCAD4, CAD, CAD-C | GroES-like
zinc-binding alcohol dehydrogenase family protein | chr3:6744598-6747214
FORWARD LENGTH=1568
Length=1568
Score = 662 bits (358), Expect = 0.0
Identities = 841/1065 (79%), Gaps = 70/1065 (7%)
Strand=Plus/Plus
Query 53 AGGCTGGGCTGCAAGAGATCCATCTGG-GACTCTCTCTCCTTACACTTACACTCTT-AGA 110
||| ||||||||||||||||| ||||| | ||||||||||||| | |||||| || ||
Sbjct 297 AGGATGGGCTGCAAGAGATCCTTCTGGTG-TTCTCTCTCCTTACTCCTACACT-TTAAG- 353
Query 111 GAG-ACTGGACCAGAGGATGTGAACAT-AAGAATCATTTGCTGTGGAATCTGCCACACTG 168
||| || ||| |||| |||||| | || ||| | || ||||||||||| ||||| ||||
Sbjct 354 GAGCACAGGAGCAGATGATGTGTATATAAAG-GTTATATGCTGTGGAATATGCCATACTG 412
Query 169 ATCTTCATCAAACCAAAAATGATCTTGGCATGTCTAACTACCCCATGGTTCCAGGGCATG 228
|| |||| |||| |||||||||||||| |||||||| || || |||||||| ||||| |
Sbjct 413 ATATTCACCAAATTAAAAATGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACG 472
Query 229 AAGTGGTAGGTGAAGTGGTGGAGGTTGGATCAGATGTGAGCAAGTTCACTGTAGGTGACA 288
| || |||||||| ||| |||| || ||||||||||||||||||||||| ||||| ||
Sbjct 473 AGGTAGTAGGTGAGGTGTTGGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATG 532
Query 289 TAGTTGGAGTTGG-TTGCCTCGTTGGATGTTGCGG-AGGTTGTAGCCCTTGCGAG-AGAG 345
|||| ||||| || || |||||||||| ||||| | | || | || ||| || ||
Sbjct 533 TAGTCGGAGTCGGCGTG-GTCGTTGGATGCTGCGGTA-GCTGCAAACCATGC-AGCTCAG 589
Query 346 ATCTGGAACAGTATTGTCCA-AAGAAG-ATTTGGAGCTACAACGATGTTTACATCGATGG 403
| || || ||||||||| | ||| || || ||||| ||||||||||| |||| ||||||
Sbjct 590 AACTTGAGCAGTATTGT-AACAAG-AGAATCTGGAGTTACAACGATGTCTACACCGATGG 647
Query 404 TCAACCTACACAAGGCGGGTTCG-CTAAAGCCACCG-TCGTTC-ACCAAAAGTTTGTGGT 460
||||||| ||||| || |||| | | | ||| | ||| || | ||||||||||||||
Sbjct 648 AAAACCTACTCAAGGTGGCTTCGCCGACA-CCA-TGATCG-TCAATCAAAAGTTTGTGGT 704
Query 461 GAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCACTACTGTGCGCTGGTGTGAC 520
|||||||||||||||||||||||| ||||||||||| || ||||| ||||| || || ||
Sbjct 705 GAAGATTCCAGAAGGAATGGCGGTGGAGCAGGCTGCACCGCTACTCTGCGCGGGAGTAAC 764
Query 521 GGTGTATAGTCCACTGAGCCACTTCGGTCTGAAA--CAACCAGGCCTAAGAGGAGGCATA 578
||| |||||||| |||||||||||||||| || | | ||| ||| |||||| ||
Sbjct 765 GGTTTATAGTCCGTTGAGCCACTTCGGTCT-AATGGCGAGTGGGCTTAA-AGGAGGGATT 822
Query 579 CTAGGGTTAGGTGGAGTTGGTCACATGGGTGTGAAAATAGCCAAAGCAATGGGTCACCAT 638
||||||||||||||||| || |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 823 CTAGGGTTAGGTGGAGTAGGGCACATGGGTGTGAAGATAGCTAAAGCAATGGGACACCAT 882
Query 639 GTGACTGTCATTAGCTCATCAAACAAGAAGAGAGAAGAGGCTCTGCAAGACCTT--GGAG 696
|||||||| || ||||||||| | ||||| | |||||| ||| | | | || || ||||
Sbjct 883 GTGACTGTGATAAGCTCATCAGATAAGAAAAAAGAAGAAGCTAT-CGA-ACATTTAGGAG 940
Query 697 CTGATGATTACGTGATCG-GATCTGA-CCAAGCAAAGATG-AGCGAATTGGCTGATTCG- 752
|||| || || ||| | | | ||||| ||| ||| ||||| | || | | | |||||
Sbjct 941 CTGACGACTATGTGGT-GAGCTCTGATCCA-GCAGAGATGCAAAGACTCG-CAGATTCCC 997
Query 753 TTGGATTACGTAATTGACACGGTTCC--TGTTCATCACGCACTTGAGCCTTATTTGTCTC 810
||| | ||| | |||||||| || || |||| |||| | || || ||||| ||| ||
Sbjct 998 TTG-ACTACATCATTGACACCGTACCGGTGTT--TCACCCTCTCGACCCTTACTTGGCT- 1053
Query 811 TG-CTTAAGCTTGATGGGAAGCTT-ATTCTCATGGGAGTTATCAACAATCC-CTTGCAGT 867
|| ||||| || || ||||| || ||||||||||| |||||||||| ||| ||| ||||
Sbjct 1054 TGTCTTAAACTCGACGGGAAA-TTGATTCTCATGGGTGTTATCAACACTCCTCTT-CAGT 1111
Query 868 TTCTT-ACTCCTCTGCTT-ATGCTTGGGAGGAAAGTGATAACGGGGAGCTTCATAGGGAG 925
| | | || ||||| | | || |||||||||||||||||| | |||||||| ||||||||
Sbjct 1112 T-CGTGACCCCTCT-CGTCATTCTTGGGAGGAAAGTGATATCAGGGAGCTTTATAGGGAG 1169
Query 926 CATGAAGGAGACAGAGGA-GATGCTTGAG-TT-CTGTAAAGA-AAAGGGATTGA-GTTCG 980
||| || |||||||| || | || ||| | || ||| ||||| |||||| || | || ||
Sbjct 1170 CATTAAAGAGACAGAAGAAG-TG-TTG-GCTTTCTGCAAAGAGAAAGGGCTT-ACGT-CG 1224
Query 981 ATC-ATCGAAGTTGTGAAGATGGATTATG-TTAACACTGCGTTTGAGAGACT-CGAGAAG 1037
| | || ||| ||||||||| ||| | | |||||| |||||||||||| || || |||
Sbjct 1225 A-CGATTGAAACTGTGAAGATCGATGA-GCTTAACATTGCGTTTGAGAGGCTTCGC-AAG 1281
Query 1038 AACGATGTGCGTTATAGGTTCGTCGTTGATGTCGAAGGAAGCAAT 1082
|||||||| ||||| || || || |||||||| | |||||| |||
Sbjct 1282 AACGATGTTCGTTACAGATTTGTGGTTGATGTTGCAGGAAGTAAT 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54618192960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5