BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944491
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34440.1 | Symbols: | Protein kinase superfamily protein | ... 368 4e-101
> AT4G34440.1 | Symbols: | Protein kinase superfamily protein
| chr4:16465828-16468956 FORWARD LENGTH=2317
Length=2317
Score = 368 bits (199), Expect = 4e-101
Identities = 228/242 (94%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 452 GATGGTTCAAATGGCTTCTTGTGCAGCTGCAGCAATCAGACACTCAGCAAGAAGACGGCC 511
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1761 GATGGTTCAAATGGCTTCTTGTGCAGCTGCAGCAATCAGACATTCAGCAAGAAGACGGCC 1820
Query 512 TAAGATGAGCCAGATTGTACGAGCACTAGAAGGAGATATGTCAATGGAGGATCTAAGTGA 571
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1821 TAAGATGAGCCAGATTGTACGAGCACTAGAAGGAGATATGTCAATGGATGATCTAAGTGA 1880
Query 572 AGGAACAAGACCGGGACAAAGCACCTATTTGAGCCCCGGAAGCGTGAGCTCGGAGTATGA 631
||||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||
Sbjct 1881 GGGAACAAGACCAGGACAAAGCACGTACTTGAGCCCCGGGAGCGTGAGCTCAGAGTATGA 1940
Query 632 TGCAAGCTCTTACA-GTGCAGACATGAAAAAATTCAAGAAATTGGCGTTAGAGAATAAAG 690
|||||||| |||| | |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1941 CGCAAGCTCGTACACG-GCAGACATGAAAAAGTTCAAGAAACTGGCGTTAGAGAATAAAG 1999
Query 691 AA 692
||
Sbjct 2000 AA 2001
Score = 331 bits (179), Expect = 5e-90
Identities = 203/215 (94%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 238 ATTTTGGATTAGCTAAGTTATCTCAAGACAACTATACTCATGTCTCTACTCGAGTCATGG 297
|||||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1457 ATTTTGGATTGGCTAAGCTATCTCAAGACAACTATACTCATGTCTCCACTCGCGTCATGG 1516
Query 298 GAACTTTTGGATACTTAGCTCCAGAGTATGCTTCAAGTGGAAAGTTATCCGACAAATCTG 357
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1517 GAACTTTTGGATACTTAGCTCCAGAGTATGCATCAAGCGGAAAGTTATCCGACAAATCTG 1576
Query 358 ATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATAACCGGACGACCTCATGTGGATC 417
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 1577 ATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATAACCGGAAGACCTCCTCTGGATC 1636
Query 418 TAACTGGAGAAATGGAAGACAGCTTGGTCGACTGG 452
||||||||||||||||||| |||||||| || |||
Sbjct 1637 TAACTGGAGAAATGGAAGATAGCTTGGTAGATTGG 1671
Score = 231 bits (125), Expect = 5e-60
Identities = 174/195 (89%), Gaps = 13/195 (7%)
Strand=Plus/Plus
Query 1 CCAAAGCACTTTCACGTACGATGAATTGTCTATTGCAACAGAAGGTTTTCACTCAGTCAA 60
||||||||||||||| ||||||||| |||| |||||||||||||| |||| |||||||||
Sbjct 984 CCAAAGCACTTTCACATACGATGAACTGTCCATTGCAACAGAAGG-TTTCGCTCAGTCAA 1042
Query 61 ATTTGCTAGGACAAGGACGATTTGGGTATGTTCATAAAGGAGTTTTGCCTTGTGGCAAAG 120
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1043 ATTTGCTAGGACAAGGAGGATTTGGGTATGTTCATAAAGGAGTTCTGCCTAGTGGCAAAG 1102
Query 121 AAGTTGCAGTGAAGAGTCTTAAAC----AAG-GT----G---AACGCGAGTTTCAAGCAG 168
|||||||||||||||||||||||| ||| | | ||||||||||||||||||
Sbjct 1103 AAGTTGCAGTGAAGAGTCTTAAACTTGGAAGTGGACAAGGGGAACGCGAGTTTCAAGCAG 1162
Query 169 AGGTTGATATCATTA 183
|||||||||||||||
Sbjct 1163 AGGTTGATATCATTA 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5