BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944491 Length=742 Score E Sequences producing significant alignments: (Bits) Value AT4G34440.1 | Symbols: | Protein kinase superfamily protein | ... 368 4e-101 > AT4G34440.1 | Symbols: | Protein kinase superfamily protein | chr4:16465828-16468956 FORWARD LENGTH=2317 Length=2317 Score = 368 bits (199), Expect = 4e-101 Identities = 228/242 (94%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 452 GATGGTTCAAATGGCTTCTTGTGCAGCTGCAGCAATCAGACACTCAGCAAGAAGACGGCC 511 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1761 GATGGTTCAAATGGCTTCTTGTGCAGCTGCAGCAATCAGACATTCAGCAAGAAGACGGCC 1820 Query 512 TAAGATGAGCCAGATTGTACGAGCACTAGAAGGAGATATGTCAATGGAGGATCTAAGTGA 571 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1821 TAAGATGAGCCAGATTGTACGAGCACTAGAAGGAGATATGTCAATGGATGATCTAAGTGA 1880 Query 572 AGGAACAAGACCGGGACAAAGCACCTATTTGAGCCCCGGAAGCGTGAGCTCGGAGTATGA 631 ||||||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||| Sbjct 1881 GGGAACAAGACCAGGACAAAGCACGTACTTGAGCCCCGGGAGCGTGAGCTCAGAGTATGA 1940 Query 632 TGCAAGCTCTTACA-GTGCAGACATGAAAAAATTCAAGAAATTGGCGTTAGAGAATAAAG 690 |||||||| |||| | |||||||||||||| ||||||||| |||||||||||||||||| Sbjct 1941 CGCAAGCTCGTACACG-GCAGACATGAAAAAGTTCAAGAAACTGGCGTTAGAGAATAAAG 1999 Query 691 AA 692 || Sbjct 2000 AA 2001 Score = 331 bits (179), Expect = 5e-90 Identities = 203/215 (94%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 238 ATTTTGGATTAGCTAAGTTATCTCAAGACAACTATACTCATGTCTCTACTCGAGTCATGG 297 |||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1457 ATTTTGGATTGGCTAAGCTATCTCAAGACAACTATACTCATGTCTCCACTCGCGTCATGG 1516 Query 298 GAACTTTTGGATACTTAGCTCCAGAGTATGCTTCAAGTGGAAAGTTATCCGACAAATCTG 357 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1517 GAACTTTTGGATACTTAGCTCCAGAGTATGCATCAAGCGGAAAGTTATCCGACAAATCTG 1576 Query 358 ATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATAACCGGACGACCTCATGTGGATC 417 |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| Sbjct 1577 ATGTTTTCTCATTTGGAGTAATGCTTCTTGAGCTCATAACCGGAAGACCTCCTCTGGATC 1636 Query 418 TAACTGGAGAAATGGAAGACAGCTTGGTCGACTGG 452 ||||||||||||||||||| |||||||| || ||| Sbjct 1637 TAACTGGAGAAATGGAAGATAGCTTGGTAGATTGG 1671 Score = 231 bits (125), Expect = 5e-60 Identities = 174/195 (89%), Gaps = 13/195 (7%) Strand=Plus/Plus Query 1 CCAAAGCACTTTCACGTACGATGAATTGTCTATTGCAACAGAAGGTTTTCACTCAGTCAA 60 ||||||||||||||| ||||||||| |||| |||||||||||||| |||| ||||||||| Sbjct 984 CCAAAGCACTTTCACATACGATGAACTGTCCATTGCAACAGAAGG-TTTCGCTCAGTCAA 1042 Query 61 ATTTGCTAGGACAAGGACGATTTGGGTATGTTCATAAAGGAGTTTTGCCTTGTGGCAAAG 120 ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1043 ATTTGCTAGGACAAGGAGGATTTGGGTATGTTCATAAAGGAGTTCTGCCTAGTGGCAAAG 1102 Query 121 AAGTTGCAGTGAAGAGTCTTAAAC----AAG-GT----G---AACGCGAGTTTCAAGCAG 168 |||||||||||||||||||||||| ||| | | |||||||||||||||||| Sbjct 1103 AAGTTGCAGTGAAGAGTCTTAAACTTGGAAGTGGACAAGGGGAACGCGAGTTTCAAGCAG 1162 Query 169 AGGTTGATATCATTA 183 ||||||||||||||| Sbjct 1163 AGGTTGATATCATTA 1177 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36017883399 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5