BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944493 Length=1403 Score E Sequences producing significant alignments: (Bits) Value AT4G32940.1 | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar pro... 457 2e-127 AT2G25940.1 | Symbols: ALPHA-VPE, ALPHAVPE | alpha-vacuolar pro... 196 4e-49 > AT4G32940.1 | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900270-15903268 REVERSE LENGTH=1879 Length=1879 Score = 457 bits (247), Expect = 2e-127 Identities = 399/466 (86%), Gaps = 36/466 (8%) Strand=Plus/Plus Query 586 GTGTTTTATGTCCAAGCTTGTGAATCTGGAAGTATCTTTGAAGGGCTTCTTCTTCCAGAG 645 ||||||||| || ||||||| |||||||||||||||||||||||| |||||||| ||| Sbjct 744 GTGTTTTATCTCGAAGCTTGCGAATCTGGAAGTATCTTTGAAGGG---CTTCTTCCTGAG 800 Query 646 GGTTTGAACATTTATGCCACAACTGCATCAAACGCTGAAAAAAGCA------G------T 693 ||||||||||| ||||||||||||||||||||||| ||| |||||| | | Sbjct 801 GGTTTGAACATCTATGCCACAACTGCATCAAACGCCGAAGAAAGCAGTTGGGGTACCTAT 860 Query 694 TGCCCTGGAGAGGAACCTTGTCCTCCACTGAAGTATGAAACTTGTTTAGTTGAC-T-TAC 751 ||||||||||||||||| ||||||||| | |||||||||||||||||| |||| | ||| Sbjct 861 TGCCCTGGAGAGGAACCCAGTCCTCCACCGGAGTATGAAACTTGTTTAGGTGACTTGTAC 920 Query 752 --TG-AGAC-T--CT-GCA-ACAGTGGTATGCACATTTTTCAGACTGAGACTCTGCACCA 803 || | | | | | | | ||||||||||||| ||| |||||||||||||||||||| Sbjct 921 AGTGTTG-CTTGGATGGAAGATAGTGGTATGCACAATTTACAGACTGAGACTCTGCACCA 979 Query 804 GAAATATGAAC---T-----GGAGGTCTGCACCTGTGTTGGGTTCGCTTATGGTTCTCAT 855 | ||||||||| | ||||| ||||||| |||||||| | |||||||||||||| Sbjct 980 GCAATATGAACTTGTGAAAAGGAGGACTGCACC--TGTTGGGTACTCTTATGGTTCTCAT 1037 Query 856 GTCATGCAATATGGCGATGTAGGACTTAGCAAGGATAAGCTCGACCTTTGTATGGGAACA 915 |||||||||||||||||||||||| ||||||||||||| ||||| |||| |||||||||| Sbjct 1038 GTCATGCAATATGGCGATGTAGGAATTAGCAAGGATAATCTCGATCTTTATATGGGAACA 1097 Query 916 AACTCTGCCAATGACAATTTCACCTTTGCGGATGCGAACTCACTCAAGCCACCTTCAAGA 975 ||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| Sbjct 1098 AACCCTGCCAATGACAATTTTACCTTTGCGGATGCGAATTCACTAAAGCCACCTTCAAGA 1157 Query 976 GTTACAAACCAGCGTGATGCAGATCTTGTCCATTTTTGGGAAAAGT 1021 ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1158 GTTACAAACCAGCGTGATGCAGATCTTGTTCATTTTTGGGAAAAGT 1203 Score = 226 bits (122), Expect = 5e-58 Identities = 161/178 (90%), Gaps = 9/178 (5%) Strand=Plus/Plus Query 1156 GTACGGTCTGCTGGGCAACAGCTAGTCGATGACTGGAACTGCCTCAAAAAT----T---T 1208 ||||||||||||||||||| ||||||||||||||||||||||| |||||| | Sbjct 1356 GTACGGTCTGCTGGGCAACCTCTAGTCGATGACTGGAACTGCCTTAAAAATCAGGTGAGA 1415 Query 1209 GC-TT-GAGAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCCTTT 1266 || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1416 GCTTTCGAGAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCTTTT 1475 Query 1267 GCAAACATCTGCAACGCAGGGATCCAAATGGGGCAAATGGAGGAGGCAGCTTCACAGG 1324 |||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| Sbjct 1476 GCAAACATCTGCAATGCAGGGATTCAAATGGAGCAAATGGAGGAGGCAGCTTCACAGG 1533 > AT2G25940.1 | Symbols: ALPHA-VPE, ALPHAVPE | alpha-vacuolar processing enzyme | chr2:11063301-11066028 REVERSE LENGTH=1640 Length=1640 Score = 196 bits (106), Expect = 4e-49 Identities = 355/469 (76%), Gaps = 42/469 (9%) Strand=Plus/Plus Query 586 GTGTTTTATGTCCAAGCTTGTGAATCTGGAAGTATCTTTGAAGGGCTTCTTCTT-CCAGA 644 ||||||||| | | |||||||||||||||||||| |||||| || |||| || ||||| Sbjct 600 GTGTTTTATTTGGAGGCTTGTGAATCTGGAAGTATTTTTGAA-GG--TCTT-TTACCAGA 655 Query 645 GGGTTTGAACATTTATGCCACAACTGCATCAAACGCTGAA-AAA--AGC------A-GT- 693 |||||| || ||||| || ||||||||||| || || ||| ||| ||| | | Sbjct 656 GGGTTTAAATATTTACGCGACAACTGCATCGAATGCAGAAGAAAGTAGCTGGGGTACTTA 715 Query 694 -TGCCCTGGAGAGGAACCTTGTCCTCC-ACTGAAGTATGAAACTTGTTTAGTTGAC-T-T 749 || ||||||||||| ||| ||||||| ||| ||||||| || ||||| | |||| | | Sbjct 716 CTGTCCTGGAGAGGATCCTAGTCCTCCTTCTG-AGTATGAGACCTGTTTGGGTGACTTAT 774 Query 750 AC--TG-AGAC-T--CT-GCA-ACAGTGGTATGCACATTTTTCAGACTGAGACTCTGCAC 801 || || | | | | | | | |||| | |||| ||| || || |||||| ||||| Sbjct 775 ACAGTGTTG-CTTGGATAGAAGATAGTGAAAAACACAATTTACAAACAGAGACTTTGCAC 833 Query 802 CAGAAATATGAACTGGAG-GTCTG-CACCTG--TGTT-GGGTTCG-CTTATGGTTCTCAT 855 || |||||||| ||| | | | ||| ||| ||| | |||||||||||||| Sbjct 834 GAGCAATATGAATTGGTGAAAAAGAGAACTGCAGGTTCTGGTAAGTCTTATGGTTCTCAT 893 Query 856 GTCATGCAATATGGCGATGTAGGACTTAGCAAGGATAAGCTCGACCTTTGTATGGGAACA 915 || ||| ||| ||| ||| ||||||| |||||||| ||||| | ||||| |||||| ||| Sbjct 894 GTTATGGAATTTGGAGATATAGGACTCAGCAAGGAGAAGCTTGTCCTTTTTATGGGTACA 953 Query 916 AACT-CTGCCA-ATGACAATTTCACCTTTGCGGATGCGAACTCACTCAA-GCCACCTTCA 972 || | | | || |||| || |||||||||| | ||| ||| ||| | || ||| |||||| Sbjct 954 AA-TCCAG-CAGATGAAAACTTCACCTTTGTGAATGAGAATTCAAT-AAGGCCGCCTTCA 1010 Query 973 AGAGTTACAAACCAGCGTGATGCAGATCTTGTCCATTTTTGGGAAAAGT 1021 ||||||||||||||||||||||| |||||||||||||| ||| | |||| Sbjct 1011 AGAGTTACAAACCAGCGTGATGCGGATCTTGTCCATTTCTGGCATAAGT 1059 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69126150465 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5