BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944493
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32940.1 | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar pro... 457 2e-127
AT2G25940.1 | Symbols: ALPHA-VPE, ALPHAVPE | alpha-vacuolar pro... 196 4e-49
> AT4G32940.1 | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing
enzyme | chr4:15900270-15903268 REVERSE LENGTH=1879
Length=1879
Score = 457 bits (247), Expect = 2e-127
Identities = 399/466 (86%), Gaps = 36/466 (8%)
Strand=Plus/Plus
Query 586 GTGTTTTATGTCCAAGCTTGTGAATCTGGAAGTATCTTTGAAGGGCTTCTTCTTCCAGAG 645
||||||||| || ||||||| |||||||||||||||||||||||| |||||||| |||
Sbjct 744 GTGTTTTATCTCGAAGCTTGCGAATCTGGAAGTATCTTTGAAGGG---CTTCTTCCTGAG 800
Query 646 GGTTTGAACATTTATGCCACAACTGCATCAAACGCTGAAAAAAGCA------G------T 693
||||||||||| ||||||||||||||||||||||| ||| |||||| | |
Sbjct 801 GGTTTGAACATCTATGCCACAACTGCATCAAACGCCGAAGAAAGCAGTTGGGGTACCTAT 860
Query 694 TGCCCTGGAGAGGAACCTTGTCCTCCACTGAAGTATGAAACTTGTTTAGTTGAC-T-TAC 751
||||||||||||||||| ||||||||| | |||||||||||||||||| |||| | |||
Sbjct 861 TGCCCTGGAGAGGAACCCAGTCCTCCACCGGAGTATGAAACTTGTTTAGGTGACTTGTAC 920
Query 752 --TG-AGAC-T--CT-GCA-ACAGTGGTATGCACATTTTTCAGACTGAGACTCTGCACCA 803
|| | | | | | | | ||||||||||||| ||| ||||||||||||||||||||
Sbjct 921 AGTGTTG-CTTGGATGGAAGATAGTGGTATGCACAATTTACAGACTGAGACTCTGCACCA 979
Query 804 GAAATATGAAC---T-----GGAGGTCTGCACCTGTGTTGGGTTCGCTTATGGTTCTCAT 855
| ||||||||| | ||||| ||||||| |||||||| | ||||||||||||||
Sbjct 980 GCAATATGAACTTGTGAAAAGGAGGACTGCACC--TGTTGGGTACTCTTATGGTTCTCAT 1037
Query 856 GTCATGCAATATGGCGATGTAGGACTTAGCAAGGATAAGCTCGACCTTTGTATGGGAACA 915
|||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||
Sbjct 1038 GTCATGCAATATGGCGATGTAGGAATTAGCAAGGATAATCTCGATCTTTATATGGGAACA 1097
Query 916 AACTCTGCCAATGACAATTTCACCTTTGCGGATGCGAACTCACTCAAGCCACCTTCAAGA 975
||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 1098 AACCCTGCCAATGACAATTTTACCTTTGCGGATGCGAATTCACTAAAGCCACCTTCAAGA 1157
Query 976 GTTACAAACCAGCGTGATGCAGATCTTGTCCATTTTTGGGAAAAGT 1021
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1158 GTTACAAACCAGCGTGATGCAGATCTTGTTCATTTTTGGGAAAAGT 1203
Score = 226 bits (122), Expect = 5e-58
Identities = 161/178 (90%), Gaps = 9/178 (5%)
Strand=Plus/Plus
Query 1156 GTACGGTCTGCTGGGCAACAGCTAGTCGATGACTGGAACTGCCTCAAAAAT----T---T 1208
||||||||||||||||||| ||||||||||||||||||||||| |||||| |
Sbjct 1356 GTACGGTCTGCTGGGCAACCTCTAGTCGATGACTGGAACTGCCTTAAAAATCAGGTGAGA 1415
Query 1209 GC-TT-GAGAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCCTTT 1266
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1416 GCTTTCGAGAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCTTTT 1475
Query 1267 GCAAACATCTGCAACGCAGGGATCCAAATGGGGCAAATGGAGGAGGCAGCTTCACAGG 1324
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1476 GCAAACATCTGCAATGCAGGGATTCAAATGGAGCAAATGGAGGAGGCAGCTTCACAGG 1533
> AT2G25940.1 | Symbols: ALPHA-VPE, ALPHAVPE | alpha-vacuolar processing
enzyme | chr2:11063301-11066028 REVERSE LENGTH=1640
Length=1640
Score = 196 bits (106), Expect = 4e-49
Identities = 355/469 (76%), Gaps = 42/469 (9%)
Strand=Plus/Plus
Query 586 GTGTTTTATGTCCAAGCTTGTGAATCTGGAAGTATCTTTGAAGGGCTTCTTCTT-CCAGA 644
||||||||| | | |||||||||||||||||||| |||||| || |||| || |||||
Sbjct 600 GTGTTTTATTTGGAGGCTTGTGAATCTGGAAGTATTTTTGAA-GG--TCTT-TTACCAGA 655
Query 645 GGGTTTGAACATTTATGCCACAACTGCATCAAACGCTGAA-AAA--AGC------A-GT- 693
|||||| || ||||| || ||||||||||| || || ||| ||| ||| | |
Sbjct 656 GGGTTTAAATATTTACGCGACAACTGCATCGAATGCAGAAGAAAGTAGCTGGGGTACTTA 715
Query 694 -TGCCCTGGAGAGGAACCTTGTCCTCC-ACTGAAGTATGAAACTTGTTTAGTTGAC-T-T 749
|| ||||||||||| ||| ||||||| ||| ||||||| || ||||| | |||| | |
Sbjct 716 CTGTCCTGGAGAGGATCCTAGTCCTCCTTCTG-AGTATGAGACCTGTTTGGGTGACTTAT 774
Query 750 AC--TG-AGAC-T--CT-GCA-ACAGTGGTATGCACATTTTTCAGACTGAGACTCTGCAC 801
|| || | | | | | | | |||| | |||| ||| || || |||||| |||||
Sbjct 775 ACAGTGTTG-CTTGGATAGAAGATAGTGAAAAACACAATTTACAAACAGAGACTTTGCAC 833
Query 802 CAGAAATATGAACTGGAG-GTCTG-CACCTG--TGTT-GGGTTCG-CTTATGGTTCTCAT 855
|| |||||||| ||| | | | ||| ||| ||| | ||||||||||||||
Sbjct 834 GAGCAATATGAATTGGTGAAAAAGAGAACTGCAGGTTCTGGTAAGTCTTATGGTTCTCAT 893
Query 856 GTCATGCAATATGGCGATGTAGGACTTAGCAAGGATAAGCTCGACCTTTGTATGGGAACA 915
|| ||| ||| ||| ||| ||||||| |||||||| ||||| | ||||| |||||| |||
Sbjct 894 GTTATGGAATTTGGAGATATAGGACTCAGCAAGGAGAAGCTTGTCCTTTTTATGGGTACA 953
Query 916 AACT-CTGCCA-ATGACAATTTCACCTTTGCGGATGCGAACTCACTCAA-GCCACCTTCA 972
|| | | | || |||| || |||||||||| | ||| ||| ||| | || ||| ||||||
Sbjct 954 AA-TCCAG-CAGATGAAAACTTCACCTTTGTGAATGAGAATTCAAT-AAGGCCGCCTTCA 1010
Query 973 AGAGTTACAAACCAGCGTGATGCAGATCTTGTCCATTTTTGGGAAAAGT 1021
||||||||||||||||||||||| |||||||||||||| ||| | ||||
Sbjct 1011 AGAGTTACAAACCAGCGTGATGCGGATCTTGTCCATTTCTGGCATAAGT 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5