BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944496
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42050.1 | Symbols: | vacuolar ATP synthase subunit H famil... 1149 0.0
AT4G34180.1 | Symbols: | Cyclase family protein | chr4:1636935... 130 4e-29
> AT3G42050.1 | Symbols: | vacuolar ATP synthase subunit H family
protein | chr3:14228495-14233245 REVERSE LENGTH=1900
Length=1900
Score = 1149 bits (622), Expect = 0.0
Identities = 677/704 (96%), Gaps = 2/704 (0%)
Strand=Plus/Plus
Query 599 GCTTCTGTATGAAATATGTCTCTGCGTCTGGCTTCTGTCCTATTATGAACCTGCAATAGA 658
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 868 GCTTCTGTATGAAACATGTCTCTGCATCTGGCTTCTGTCCTATTATGAACCTGCAATAGA 927
Query 659 GTACTTGGCAACGTCGAGGACAATGCAAAGGCTCACGGAAGTGGTCAAGAACTCGACTAA 718
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 928 GTACTTGGCAACATCGAGGACAATGCAAAGGCTCACGGAAGTGGTTAAGCACTCGACTAA 987
Query 719 GGAAAAGGTTGTCAGGGTGGTCATATTGACATTCAGGAACCTGCTTCCAAAAGGTACATT 778
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 988 GGAAAAGGTTGTCAGGGTGGTCATATTGACATTCAGGAACCTTCTTCCAAAAGGTACATT 1047
Query 779 TGGTGCCCAGATGGTTGATCTTGGACTCCCTCATATTATCCACAGTCTAAAAACACAAGC 838
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1048 TGGTGCCCAGATGGTTGATCTTGGACTCCCACATATTATCCACAGTCTAAAAACACAAGC 1107
Query 839 ATGGAGTGACGAGGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 ATGGAGTGACGAGGACTTGCTGGATGCACTGAACCAACTAGAAGAAGGGCTAAAAGACAA 1167
Query 899 GATCAAGAAATTGAGTTCCTTTGACAAATATAAGCAAGAGGTGCTTCTTGGCCATCTTGA 958
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1168 GATCAAGAAATTGAGTTCCTTTGATAAATATAAGCAAGAGGTGCTCCTTGGCCATCTTGA 1227
Query 959 CTGGAACCCAATGCACAAAGAGGCCAATTTCTGGCGTGAGAATGTCACATGCTTTGAAGA 1018
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1228 CTGGAACCCAATGCACAAGGAGACCAATTTCTGGCGTGAGAATGTCACATGCTTTGAGGA 1287
Query 1019 GAACGACTTCCAGATACTAAGGGTCCTCCTCACAATCCTGGACACGTCAAGTGACCCCAG 1078
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1288 GAACGACTTCCAGATACTCAGGGTCCTCCTCACAATCCTGGACACCTCAAGTGATCCCAG 1347
Query 1079 ATCATTGGCGGTGGCATGCTTTGATATTTCACAGTTCATACAGTACCATGCAGCGGGAAG 1138
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 1348 ATCATTGGCGGTGGCATGCTTTGATATCTCACAGTTCATACAATACCATGCAGCGGGGAG 1407
Query 1139 AGTGATCGTAGCAGACCTCAAGGCAAAAGAACGAGTGATGAAGCTGATGAACCACGAGAA 1198
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1408 AGTGATTGTAGCAGACCTCAAGGCAAAAGAGCGAGTGATGAAGCTGATAAACCACGAGAA 1467
Query 1199 CGCTGAGGTGACCAAGAACGCTCTCTTGTGCATTCAGAGGCTTCTCCTGGGAGCCAAGTA 1258
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1468 CGCTGAGGTGACCAAGAACGCTATCTTGTGCATTCAGAGGCTTCTCCTGGGTGCCAAGTA 1527
Query 1259 CGCTAGCTTCTTGCAAGCTTGATGGGACT-TGCA-TGTTTCTTT 1300
||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1528 CGCTAGCTTCTTGCAAGCTTGATGGGACTCTTCCCTGTTTCTTT 1571
Score = 990 bits (536), Expect = 0.0
Identities = 558/569 (98%), Gaps = 0/569 (0%)
Strand=Plus/Plus
Query 20 ACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGGTATTGAAGAGGGACATTCCATGGGA 79
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 220 ACTCATGGATCAGGCGGAGCTGAGTATAGAGCAGGTATTGAAAAGGGACATTCCATGGGA 279
Query 80 GACTTACATGAACACTAAGCTGGTTTCAGCTAAAGGACTCCAGCTCTTAAGGCGCTACGA 139
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 280 GACTTACATGAACACTAAGCTGGTTTCAGCTAAAGGTCTCCAGCTCTTAAGGCGCTATGA 339
Query 140 TAAAAAACCTGAAAGTGCAAGGGCACAGTTGCTCGATGAAGATGGTCCAGCTTATGTTCA 199
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TAAAAAACCTGAAAGTGCTAGGGCACAGTTGCTCGATGAAGATGGTCCAGCTTATGTTCA 399
Query 200 TCTGTTTGTTAGCATCTTACGTGATATATTCAAGGAAGAAACTGTGGAATATGTCTTGGC 259
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 400 TCTCTTTGTTAGCATCTTACGTGATATATTCAAGGAAGAAACTGTCGAATATGTTTTGGC 459
Query 260 TTTGATTTATGAAATGCTCTCAGCAAACCCAACACGAGCTCGATTATTCCATGATGAATC 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TTTGATTTATGAAATGCTCTCAGCAAACCCAACACGAGCTCGATTATTCCATGATGAATC 519
Query 320 TTTGGCAAATGAGGATACTTATGAGCCTTTCTTGAGGTTGCTGTGGAAGGGAAATTGGTT 379
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 520 TTTGGCAAATGAGGATACTTATGAGCCTTTCTTGAGGTTGCTTTGGAAGGGAAATTGGTT 579
Query 380 CATTCAAGAAAAAAGCTGCAAGATCCTTGCCTGGATAATAAGTGCTAGGCCAAAAGCTGG 439
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 580 CATTCAAGAAAAAAGCTGTAAGATCCTTGCCTGGATAATAAGTGCTAGGCCAAAAGCTGG 639
Query 440 TAATGCTGTTATTGGTAATGAAATTGATGATGTTCTCAAGGGGTTGGTGGAATGGCTTTG 499
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 640 TAATGCTGTTATTGGTAATGGAATTGATGATGTTCTCAAGGGGTTGGTGGAATGGCTTTG 699
Query 500 TGCTCAGTTGAAGCAACCTTCTCATCCTACTCGTGGTGTTCCAATTGCAATCAGTTGCCT 559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 700 TGCTCAGTTGAAGCAACCTTCTCATCCTACTCGTGGTGTTCCAATTGCAATCAGCTGCCT 759
Query 560 GTCGTCACTGCTTAAGGAACCTGTTGTCA 588
|||||||||||||||||||||||||||||
Sbjct 760 GTCGTCACTGCTTAAGGAACCTGTTGTCA 788
> AT4G34180.1 | Symbols: | Cyclase family protein | chr4:16369357-16371430
REVERSE LENGTH=1419
Length=1419
Score = 130 bits (70), Expect = 4e-29
Identities = 82/88 (93%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 1213 AGAACGCTCTCTTGTGCATTCAGAGGCTTCTCCTGGGAGCCAAGTACGCTAGCTTCTTGC 1272
|||||||||||||||||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 1409 AGAACGCTCTCTTGTGCATTCAGAGGCTTCTCCTTGGTGCTAAGTACGCTAGCTTTTTGC 1350
Query 1273 AAGCTTGATGGGACTTGCATGTTTCTTT 1300
||||| |||||||||||||||| |||||
Sbjct 1349 AAGCTAGATGGGACTTGCATGTCTCTTT 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63955494330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5