BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944498
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:1635... 1784 0.0
> AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:16357639-16359555
FORWARD LENGTH=1646
Length=1646
Score = 1784 bits (966), Expect = 0.0
Identities = 1121/1189 (94%), Gaps = 37/1189 (3%)
Strand=Plus/Plus
Query 1 TTCTTGAGTTTAGT--CCCACAATGGCGATTCGGAAGGAGGAAGAAAGTAGAGAAGAACA 58
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TTCTTGAGTTTAGTCCCCCACAATGGCGATTCGGAAGGAGGAAGAAAGTAGAGAAGAACA 302
Query 59 GAGCAATTCGTTTCTTCTTGATGCTCTCTACTGTgaagaagagaaatgggaagatgaagg 118
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
Sbjct 303 GAGCAATTCGTTTCTTCTTGATGCTCTCTACTGCGAAGAAGAGAAATGGGACGATGAA-G 361
Query 119 agaagaagaagttgaagaaAACtcttccttgtcttcttcttcttctacttctccattcgt 178
| |||||||||||||||||||||||||||| |||||||| | | |||||||||||||
Sbjct 362 -G-AGAAGAAGTTGAAGAAAACTCTTCCTTG---TCTTCTTC-T-T-CTTCTCCATTCGT 413
Query 179 tcttTTGCCACAAGATTTGTTCTGGGAAGATGAAGATCTGGTCACTCTCTTCTCCAAAGA 238
| |||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 414 TGTTTTGCAACAAGATTTGTTCTGGGAAGATGAAGATCTGGTTACACTCTTCTCCAAAGA 473
Query 239 AGAAGAACAAGGACTCAGCTGTCTCGATGATGTTTATCTCTCCACGGATCGAAAAGAAGC 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 AGAAGAACAAGGACTCAGCTGTCTCGATGATGTTTATCTTTCCACGGATCGAAAAGAAGC 533
Query 299 TGTTGGTTGGATTCTGAGAGTCAACGCTCATTATGGCTTCTCTACTTTGGCAGCTGTTTT 358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 534 TGTTGGTTGGATTCTGAGAGTCAACGCTCATTATGGCTTCTCTACTTTAGCAGCTGTTTT 593
Query 359 AGCCATAACTTATCTCGATAAGTTCATCTGTAGCTACAGCTTACAGAGAGACAAACCTTG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 594 AGCCATAACTTATCTCGATAAGTTCATCTGTAGCTACAGCTTACAGAGAGACAAACCATG 653
Query 419 GATGCTTCAGCTCGTTTCTGTCGCTTGTCTCTCACTAGCTGCTAAAGTCGAAGAAACCCA 478
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 654 GATGCTTCAGCTCGTTTCTGTCGCGTGTCTCTCATTAGCTGCTAAAGTCGAAGAAACCCA 713
Query 479 AGTCCCTCTTCTTCTAGACTTTCAAGTGGAGGAGACAAAGTATGTGTTTGAAGCTAAAAC 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 714 AGTCCCTCTTCTTCTAGACTTTCAAGTGGAGGAGACAAAGTATGTGTTTGAAGCAAAAAC 773
Query 539 CATACAAAGAATGGAGCTACTGATTCTGTCTACTCTCCAATGGAAGATGCATCTCATTAC 598
|||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 774 CATACAGAGAATGGAGCTACTGATTCTGTCTACTCTCGAGTGGAAGATGCATCTCATTAC 833
Query 599 TCCAATTTCGTTTC-TAGACCACATTATCAGGAGATTGGGACTTAAGAACAATGCTCACT 657
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TCCAATTTCG-TTCGTAGACCACATTATCAGGAGATTGGGACTTAAGAACAATGCTCACT 892
Query 658 GGGATTTTCTCAACAAATGCCACCGTCTCCTCCTCTCTGTAATCTCCGATTCAAGATTTG 717
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GGGATTTCCTCAACAAATGCCACCGTCTCCTCCTCTCTGTAATCTCCGATTCAAGATTTG 952
Query 718 TCGGGTACCTCCCATCAGTAGTTGCCGCAGCTACCATGATGCGAATTATAGAGCAAGTTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TCGGGTACCTCCCATCAGTAGTTGCCGCAGCTACCATGATGCGAATTATAGAGCAAGTTG 1012
Query 778 AGCCCTTTGACCCTCCTTCATACCAAACTAATCTCCTAGGTGCCCTTAACTTAACCAAGG 837
| ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1013 ATCCCTTTGACCCTCTTTCATACCAAACTAATCTCCTCGGTGTCCTTAACTTAACCAAGG 1072
Query 838 AAAAGGTGAAAACTTGCTACGATTTAATCCTCCAACTACCAGTGGACCGCATCGGTTTAC 897
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1073 AAAAGGTGAAAACTTGCTACGATCTAATCCTCCAACTACCAGTGGACCGCATCGGTTTAC 1132
Query 898 AGATCCAAAACCAATCTTCCAAGAAACGCAAGAGTCACGAATCATCCTCATCATCGTTGA 957
||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1133 AGATCCAAATCCAATCTTCCAAGAAACGCAAGAGTCACGATTCATC---ATCATCGTTGA 1189
Query 958 ACAGCCCAAGCTGCGTGATTGATTCAAACCCTTTCAATAGTGACGAAAGCTCAAACGATT 1017
|||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1190 ACAGTCCAAGCTGCGTGATTGATGCAAACCCTTTCAATAGCGACGAAAGCTCAAACGATT 1249
Query 1018 CGTGGTCAGCG--T-CGT-C-----------GTCCTC--C-TC---GCAGCAACAACCTC 1056
||||||||||| | ||| | ||| || | || ||||||||||||||
Sbjct 1250 CGTGGTCAGCGAGTTCGTGCAACCCACCAACGTCGTCGTCGTCCCCGCAGCAACAACCTC 1309
Query 1057 CATTGAAGAAGATGAGAGGAGGTCAAGAGAATGAGAAGAAGAAGCCGATTTTGCATCTGC 1116
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1310 CATTGAAGAAGATGAGAGGAGCTGAAGAGAATGAGAAGAAGAAGCCGATTTTGCATCTGC 1369
Query 1117 CGTGGGCAATCGAAGCCACTCCATAATCGAAAGCTCGATTTCGTTTATA 1165
| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1370 CATGGGCAATCGTAGCCACTCCATAATCGAAAGCTCGATTTCGTTTATA 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5