BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944499
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34150.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 1170 0.0
> AT4G34150.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr4:16354946-16357293 FORWARD LENGTH=1171
Length=1171
Score = 1170 bits (633), Expect = 0.0
Identities = 735/784 (94%), Gaps = 7/784 (1%)
Strand=Plus/Plus
Query 6 TTCTTCCATCAATTCATGTCGATGATGGCGGGTATACAAGGCCAGATTCTCGAGGTCACT 65
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TTCTTCCA--AATTCATGTCGATGATGGCGGGTATACAAGGCCAGATTCTCGAGGTCACT 134
Query 66 GTTGTTGGGTGCCAGAAATTGAAAGACACGGAATGGTTTTCAAGGCAAGATCCATACGTC 125
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 135 GTTGTTGGGTGCCAGAAATTGAAAGACACGGAATGGTTTTCAAGACAAGATCCATACGTC 194
Query 126 GTCATTGAGTATAGCAGCACAAGGCATCGTACCAGAACCTGCACAGATGGTGGAAAGAAC 185
||| |||||||| | ||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 195 GTCCTTGAGTATGGTGGCAGAAGTCACCGTACCAGAACCTGCACAGATGGTGGAAAGAAC 254
Query 186 GCTGTTTTCCAAGAGAAGTTTATGTTCACTTTGCTTGAAGGGCTTAGGGATATTAAGGTT 245
||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 255 GCTGTTTTCCAAGAGAAGTTTATCTTCACTTTGATTGAAGGGCTTAGGGATCTTAAGGTT 314
Query 246 GCTGTCTGGAATAGCAACACTCTCTCCACTGATGACTTCATTGGGAATGCAACGATTCAA 305
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 315 GCTGTCTGGAATAGCAACACTCTCTCCACTGATGACTTCATTGGCAATGCAACGATTCAA 374
Query 306 TTGCAGAAAGTTCTTTCTCAGGGATATGACGACTGTACCTGGACTCTGCAGACTAAAACT 365
|||||||||||||||||||||| ||| |||||||||||||||||| |||||| |||||||
Sbjct 375 TTGCAGAAAGTTCTTTCTCAGGAATACGACGACTGTACCTGGACTTTGCAGAGTAAAACT 434
Query 366 GGGAGATTCGCTGGAGAAGTA-AGACTCATACTGCATTATGCAGGAGCAAAGAAACAAAA 424
||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||| ||
Sbjct 435 GGGAGATTCGCTGGAGAAGTACA-ACTCCTACTGCATTATGCGGGAGCAAAGAAACATAA 493
Query 425 TTACGGGTCTGCGCCATCAGCACCGTATGCGCCTCAAGTACCTCAATACTCAGCACCGAC 484
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 494 TTACGGGTCTGCGCCATCAGCACCGTATGCACCTCACGTACCTCAATACTCAGCACCGCC 553
Query 485 TTCTGCATCTCCATATTCACCAGCAGCACCATACTCTGGACCATCTCTATACCCACAAGT 544
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 554 TTCTGCATCTCCGTATTCAACAGCACCACCATACTCTGGACCATCTCTATACCCACAAGT 613
Query 545 ACAACAATACCCTCAGCCATCAGGATACCCACCAGCTTCATCAGCTTATCCTCCTCAGCC 604
|||||||||||||||||||||||||||||| ||||||||| | | |||||||||||||
Sbjct 614 ACAACAATACCCTCAGCCATCAGGATACCCTCCAGCTTCAGG-G-T-ATCCTCCTCAGCC 670
Query 605 ATCTGcctatcctcctccctcaacctcggcctaccctccggttccttcagcttaccctcc 664
|||||||||||| |||||||||||||||| |||||||||| | |||||||||||||| ||
Sbjct 671 ATCTGCCTATCCACCTCCCTCAACCTCGGGCTACCCTCCGATCCCTTCAGCTTACCCACC 730
Query 665 tcctccGCCATCGTCAGCTTACCCTCCTCCTCCATACCCTCCTCAACCATCATATTACCC 724
|||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 731 TCCTCCGCCATCCTCAGCTTACCCTCCTCAACCATACCCTCCGCAACCATCATATTACCC 790
Query 725 ACAAGGTCCATACCCAGGACAATACCCACCTCCTCCGTACTAGAGCCTCAGGCGTTTAGA 784
|||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 791 ACAAGGTCCATATCCAGGACAATACCCACCTCCTCCATACTAGAGCGTTTGGCGTTTAGA 850
Query 785 ATTT 788
||||
Sbjct 851 ATTT 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38328654161
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5