BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944508
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34090.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1402 0.0
> AT4G34090.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G23370.1). | chr4:16327931-16330215
REVERSE LENGTH=1398
Length=1398
Score = 1402 bits (759), Expect = 0.0
Identities = 884/941 (94%), Gaps = 21/941 (2%)
Strand=Plus/Plus
Query 106 GGCATGTATCTTTTATCAAAGATGTAGCTGCCACTGAACCTCCAATGCATCTTCATCACT 165
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 353 GGCATGTATCATTTATCAAAGATGTTGCTGCCACTGAACCTCCAATGCATCTTCATCACT 412
Query 166 TACTCAAAGTACTTCAAACAAGAGGTGAAACTATTATATCTCCTGGAGCTAAGCAGGGAC 225
|||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 413 TACTCAAAGTGCTTCAAACAAGAGGTGAGACAATCATATCTCCTGGAGCTAAGCAGGGAC 472
Query 226 TGATCCCTCTTGCTATTCCGCTTTCGAAGAATTCTTCAGGCTCTGTTACTGCGCTTTTGA 285
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 473 TGATCCCTCTTGCTATTCCGCTTTCGAAGAATTCGTCAGGCTCTGTTACTGCGCTTTTGA 532
Query 286 GATGGCCTACTGCTCCACCAGGAATGGATATGCCGGTTGTGGAAGTTTGGGGGAGTGGAG 345
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 533 GATGGCCTACTGCTCCACCAGGAATGGATATGCCGGTTGTGGAAGTTTGGAGGAGTGGAG 592
Query 346 TCCGGCTTATTGCTAGAAACGTAGATGAATACATTCACCGGATTCTAGTTGAAGAAGATG 405
|| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCAGGCTTATAGCTAGAAATGTAGATGAATACATTCACCGGATTCTAGTTGAAGAAGATG 652
Query 406 CACAAGAGTTGACAGAACTTTATCGTGCTTCAGAAGAGGCAGGTGAAAAACTTTACAAAA 465
||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |||
Sbjct 653 CACAAGAGTTGACAGAACTATATCGTGCTTCGGGAGAGGCAGGTGAAAAACTTTACGAAA 712
Query 466 AGGGTGCTTTTGCTGAATCTCAAATTGACAATCTCGATGTCTATGTCTTGAAAAAGGTTG 525
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 713 AGGGTGCTTTTGCTGAATCTGAAATTGACAATCTCGATGTCTATGTTTTGAAAAAGGTTG 772
Query 526 GACTGTTTCCAGATTTGTTGGAGCGAAAAGTATTAAGACATTTTGATGAAGGAGATCATG 585
||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 773 GACTGTTTCCAGATTTGTTGGAGCGGAAAGTATTACGGCATTTTGATGAAGGAGATCATG 832
Query 586 TATCAGCTATGGTGACAGGAGAATTTTACACAAAGAAAGACCTCTTTCCAGGATTTGGAC 645
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTTCAGCTATGGTGACAGGAGAATTTTACACAAAGAAAGACCTCTTTCCAGGATTTGGAC 892
Query 646 GACCTTTTGTATATTATGCAAATATACTGCAGAAG-------------G-----TAGGGC 687
|||||||||||||||||||||| ||||| |||||| | ||||||
Sbjct 893 GACCTTTTGTATATTATGCAAACATACTACAGAAGTTTATTCTTATTCGCAGGGTAGGGC 952
Query 688 GGAAT-TCAGAAGCAAAAGACGCGGCTAGAGTAGCATTGAAATCACCTTGGTGGACATTA 746
||||| | |||||||||||| |||||||| |||||||||| |||||| ||||||||||||
Sbjct 953 GGAATGT-AGAAGCAAAAGATGCGGCTAGGGTAGCATTGAGATCACCGTGGTGGACATTA 1011
Query 747 GGATGTCCTTATGAGGAGGTTGCTAGTATAGCACAATGGGAAGACGAGCAGATCGAATTC 806
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GGATGTCCGTATGAGGAGGTTGCTAGTATAGCACAATGGGAAGACGAGCAGATCGAATTC 1071
Query 807 ATCAGGGAAAAGGTGAGTGATGAAGGTCGTTTTGAAGATTTAAAGAAAGGCAAAGCTCCA 866
|| |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1072 ATAAGGGAAAAAGTGAGTGATGAAGGTCGTTTTGAAGATTTGCATAAAGGCAAAGCTCCA 1131
Query 867 ATCCAAGTTGCGTTGGATGTTGCGGCTTTTCTCTTGGATTTGGCTTCTATTGAAGGAACT 926
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1132 ATCCAAGTTGCGTTGGATGTTGCGGCTTTTCTCTTGGATTTGGCTTCTATCGAAGGAACT 1191
Query 927 TGGTCCGAATCTTTAAACCATATTGCTAAATGTTATGAGGAAGCTGGATTACACCATATT 986
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TGGTCCGAATCTTTAAACCATATTGCTAAATGTTATGAGGAAGCTGGATTACACCATATC 1251
Query 987 TCTAATTTCGTTTTGTACACAGATTGAATCCAGATTATATG 1027
|||||||||||||||||||||||||||||||| |||| |||
Sbjct 1252 TCTAATTTCGTTTTGTACACAGATTGAATCCATATTA-ATG 1291
Score = 154 bits (83), Expect = 2e-36
Identities = 101/109 (93%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 1 AGATAGAGAGAT---AAGAAGCCATGGGTTCGATTTCGCTGCACATAACTCCTTCTACTA 57
|||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 83 AGATAGAGAGATAAGAAGAAGCCATGGGTTCGATTTCGATGCACATAACTCCCTCTACTG 142
Query 58 CTCTCCCTTTACGCCATTTCAGAGCTAGAGTCTCTTGTTTCTCTTCTGG 106
|||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 143 CTCTCCCTATACGCCATTTCAGAGCTAGAGTCTCTTGTTGCTCTTCTGG 191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50636020176
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5