BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944510
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34050.1 | Symbols: CCoAOMT1 | S-adenosyl-L-methionine-depen... 1369 0.0
> AT4G34050.1 | Symbols: CCoAOMT1 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr4:16310775-16312216
FORWARD LENGTH=1092
Length=1092
Score = 1369 bits (741), Expect = 0.0
Identities = 783/804 (97%), Gaps = 0/804 (0%)
Strand=Plus/Plus
Query 1 agagagagagagagagagaAATGGCGACGACAACTACAGAAGCAACGAAGACATCATCCA 60
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 50 AGAGAGAGAAAGAGAGAGAAATGGCGACGACAACAACAGAAGCAACGAAGACATCATCGA 109
Query 61 CCAATGGAGAAGATCAGAAGCAATCTCAAAATCTTCGACATCAAGAAGTTGGTCACAAGA 120
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 110 CCAATGGAGAAGATCAGAAGCAGTCTCAGAATCTTCGACATCAAGAAGTTGGTCACAAGA 169
Query 121 GTCTCTTACAGAGCGATGATCTCTACCAGTATATACTGGAGACAAGTGTGTATCCTAGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GTCTCTTACAGAGCGATGATCTCTACCAGTATATACTGGAGACAAGTGTGTATCCTAGAG 229
Query 181 AACCAGAATCAATGAAGGAACTCAGAGAAGTGACAGCAAAACATCCCTGGAACATAATGA 240
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 230 AACCAGAATCAATGAAGGAACTCAGGGAAGTGACAGCAAAACATCCATGGAACATAATGA 289
Query 241 CAACATCAGCAGATGAAGGACAGTTCTTGAACATGCTTATCAAGCTCGTTAACGCCAAGA 300
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 290 CCACATCAGCTGATGAAGGACAGTTCTTAAACATGCTTATCAAGCTCGTTAACGCCAAGA 349
Query 301 ACACAATGGAGATCGGAGTTTACACTGGCTACTCTCTTCTCGCCACCGCTCTTGCTCTCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 ACACAATGGAGATCGGAGTTTACACTGGCTACTCTCTTCTCGCCACCGCTCTTGCTCTCC 409
Query 361 CTGAAGACGGCAAAATTCTGGCAATGGATGTTAACAGAGAGAATTACGAATTGGGTTTAC 420
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 410 CTGAAGACGGCAAAATTCTGGCTATGGATGTCAACAGAGAGAATTACGAATTGGGTTTAC 469
Query 421 CGATCATTGAGAAAGCCGGCGTTGCTCACAAGATCGATTTCAGGGAAGGCCCTGCTCTTC 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 470 CGATCATTGAGAAAGCCGGCGTTGCTCACAAGATCGACTTCAGGGAAGGCCCTGCTCTTC 529
Query 481 CCGTTCTTGATGAAATCGTTGCTGATGAGAAGAACCATGGAACATATGACTTTATATTCG 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 530 CCGTTCTTGATGAAATCGTTGCTGACGAGAAGAACCATGGAACATATGACTTTATATTCG 589
Query 541 TTGATGCTGACAAAGACAACTACATCAACTACCATAAACGTTTGATCGATCTTGTGAAAA 600
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 590 TTGATGCTGACAAAGACAACTACATCAACTACCACAAGCGTTTGATCGATCTTGTGAAAA 649
Query 601 TTGGAGGAGTGATTGGCTATGACAACACTTTGTGGAATGGTTCTGTCGTGGCTCCTCCTG 660
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 650 TTGGAGGAGTGATTGGCTACGACAACACTCTGTGGAATGGTTCTGTCGTGGCTCCTCCTG 709
Query 661 ATGCACCAATGAGGAAGTACGTTCGTTACTACAGAGACTTTGTTCTTGAGCTCAACAAGG 720
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 710 ATGCACCAATGAGGAAGTACGTTCGTTACTACAGAGACTTTGTTCTTGAGCTTAACAAGG 769
Query 721 CTCTTGCTGCTGACCCTCGGATTGAGATCTGTATGCTCCCTGTTGGTGATGGTATCACTA 780
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 770 CTCTTGCTGCTGACCCTCGGATCGAGATCTGTATGCTCCCTGTTGGTGATGGAATCACTA 829
Query 781 TCTGCCGTCGGATCAGTTGATTTG 804
||||||||||||||||||||||||
Sbjct 830 TCTGCCGTCGGATCAGTTGATTTG 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5