BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944516
Length=508
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33985.1 | Symbols: | Protein of unknown function (DUF1685)... 721 0.0
> AT4G33985.1 | Symbols: | Protein of unknown function (DUF1685)
| chr4:16288112-16288913 REVERSE LENGTH=710
Length=710
Score = 721 bits (390), Expect = 0.0
Identities = 460/493 (93%), Gaps = 8/493 (2%)
Strand=Plus/Plus
Query 20 AATGTCGAAACGCAACGCAGCGCCGTCGCAACCACCGCCTAGACCGCTAGTAAAACAACA 79
|||||| |||||||| | ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 56 AATGTCAAAACGCAA--C-GCGCCGTTTCAAGCACCGCCTAGACCGCTAGTAAAACAACA 112
Query 80 TTCGTGGTCACCGGATGCCGATCGAGAAGAAGCTTGGCTTCGGAAGAAGGGAAAGAAACC 139
||| ||||||||||| || ||||||||||||||||||||||| |||||||| ||| || |
Sbjct 113 TTCATGGTCACCGGACGCGGATCGAGAAGAAGCTTGGCTTCGAAAGAAGGGGAAGCAATC 172
Query 140 ATCT-GGCCGACTTGGTCGGAGTAAAAGTGTGACGGACGAAGATCTAGAAGAGCTCAAGG 198
|| | |||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 173 AT-TGGGCCGACTCGGTCGGAGTAAGAGCGTGACGGACGAAGATCTAGAAGAGCTCAAGG 231
Query 199 GATGCATCGAGCTTGGATTCGGATTCGAGCCGGATTCGCCTGATTTAGATCCAAGACTCT 258
||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 232 GATGCATCGAGCTTGGATTTGGATTCGAGCCGGATTCGCCTGATTTAGATCCGAGGCTCT 291
Query 259 CGGAAACTCTTCCAGCTCTTGGTTTATACTGTGCCGTTAATAAACAGTATAGTAGCAGAT 318
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 292 CGGAAACTCTTCCAGCTCTTGGTTTATACTGCGCCGTCAATAAACAGTATAGTAGCAGAT 351
Query 319 TGTCACGGACTTCGTCTCTTTCGTCTATCGCATCGGAAGGTGAAAACAGCAATTCGAGCA 378
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 352 TGTCACGGACTTCGTCTCTTTCGTCGATCGCATCGGAAGGTGAAAACAGCAATTCCAGCA 411
Query 379 CCACGATCGTCGATCAAGGTGATGATCCGGAGACGATGAAGCTGAGGTTGAAGCAATGGG 438
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 CGACGATCGTTGATCAAGGTGATGATCCGGAGACGATGAAGCTGAGGTTGAAGCAATGGG 471
Query 439 CTCAGGTGGTTGCTTGTTCGGTGAGGCAATTCTCCGGCGAACCAAATTGATGTTTGAAT- 497
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 472 CTCAGGTGGTTGCTTGTTCGGTGAAGCAATTCTCCGGCGAACCGAATTGATGTTTGAATC 531
Query 498 A--ATGATTAAGG 508
| ||||||||||
Sbjct 532 ATGATGATTAAGG 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24263093001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5