BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944520 Length=254 Score E Sequences producing significant alignments: (Bits) Value AT4G33960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 366 5e-101 > AT4G33960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15830.1); Has 32 Blast hits to 32 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16277366-16277779 FORWARD LENGTH=414 Length=414 Score = 366 bits (198), Expect = 5e-101 Identities = 229/244 (94%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 12 aaaaaaaaaacaaagaaaaatggtgataaaaaGGATAGAGCTGTGTATAGAGCTAATGAA 71 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8 AAAAAAAAAACAGAGAAAAATGGTGATAAAAAGGATAGAGCTGTGTATAGAGCTAATGAA 67 Query 72 GATAGGAATGGAGTTTGTGGTGGTGGTGGCTGAAGCCGTCCAGATTGTTATGCGGCAGCA 131 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 68 GATAGGTATGGAGTTTGTAGTGGTGGTGGCTGAAGCCGTCCAGATTGTTATGCGGCAACA 127 Query 132 CCTCAACCACCGTGCTCCACCTCCTCCGCCTCTCCTCCGCCATGGCCTCCTCCCTTATAC 191 ||||||||||||||||||||||||||||||| |||||||||| || || ||||||||||| Sbjct 128 CCTCAACCACCGTGCTCCACCTCCTCCGCCTGTCCTCCGCCAGGGTCTTCTCCCTTATAC 187 Query 192 CGCTTCATACCCTTCTCCGTTCCTCTTTGGATTCCTCCCTTGAAAACCTTTT-CTTGCTA 250 |||||| ||||||||||| ||||| |||||||| |||||||||| ||||||| |||| || Sbjct 188 CGCTTCTTACCCTTCTCCATTCCTATTTGGATTTCTCCCTTGAATACCTTTTTCTTGTTA 247 Query 251 TGAA 254 |||| Sbjct 248 TGAA 251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11561582270 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5