BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944520

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G33960.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   366    5e-101


> AT4G33960.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant 
structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT2G15830.1); 
Has 32 Blast hits to 32 proteins in 4 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16277366-16277779 
FORWARD LENGTH=414
Length=414

 Score =  366 bits (198),  Expect = 5e-101
 Identities = 229/244 (94%), Gaps = 1/244 (0%)
 Strand=Plus/Plus

Query  12   aaaaaaaaaacaaagaaaaatggtgataaaaaGGATAGAGCTGTGTATAGAGCTAATGAA  71
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  8    AAAAAAAAAACAGAGAAAAATGGTGATAAAAAGGATAGAGCTGTGTATAGAGCTAATGAA  67

Query  72   GATAGGAATGGAGTTTGTGGTGGTGGTGGCTGAAGCCGTCCAGATTGTTATGCGGCAGCA  131
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  68   GATAGGTATGGAGTTTGTAGTGGTGGTGGCTGAAGCCGTCCAGATTGTTATGCGGCAACA  127

Query  132  CCTCAACCACCGTGCTCCACCTCCTCCGCCTCTCCTCCGCCATGGCCTCCTCCCTTATAC  191
            ||||||||||||||||||||||||||||||| |||||||||| || || |||||||||||
Sbjct  128  CCTCAACCACCGTGCTCCACCTCCTCCGCCTGTCCTCCGCCAGGGTCTTCTCCCTTATAC  187

Query  192  CGCTTCATACCCTTCTCCGTTCCTCTTTGGATTCCTCCCTTGAAAACCTTTT-CTTGCTA  250
            |||||| ||||||||||| ||||| |||||||| |||||||||| ||||||| |||| ||
Sbjct  188  CGCTTCTTACCCTTCTCCATTCCTATTTGGATTTCTCCCTTGAATACCTTTTTCTTGTTA  247

Query  251  TGAA  254
            ||||
Sbjct  248  TGAA  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11561582270


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5