BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944521
Length=198
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49601.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 231 1e-60
> AT3G49601.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA
splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18387302-18389564
REVERSE LENGTH=2100
Length=2100
Score = 231 bits (125), Expect = 1e-60
Identities = 144/153 (94%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 13 TTAGAGTTGAAAGATGTACAACGGGATAGGGTTACAGACCGCAAGAGGATCAGGAACTAA 72
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 110 TTAGAGTTGAAAGATGTACAACGGAATAGGGTTACAGACAGCAAGAGGATCAGGAACTAA 169
Query 73 TGGTTATGTTGAGACGAATAAGTTCTTTGTGAGACCTAGAAATGGTGGTAAGCCTGTTAA 132
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 170 TGGTTATGTTCAGACGAATAAGTTTTTTGTGAGACCTAGAAATGGTGGTAAGCCTGTTAA 229
Query 133 TGGTGGTAAATGGTTT-GAGGATGATCAAGGTA 164
||||| ||| ||||| ||||||||| ||||||
Sbjct 230 AGGTGGGAAA-GGTTTTGAGGATGATGAAGGTA 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8802736425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5