BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944546
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33770.1 | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kina... 1910 0.0
> AT4G33770.1 | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase
family protein | chr4:16193422-16196428 REVERSE LENGTH=1529
Length=1529
Score = 1910 bits (1034), Expect = 0.0
Identities = 1149/1204 (95%), Gaps = 10/1204 (1%)
Strand=Plus/Plus
Query 1 TTTTTATACCGTTTCTATTAATGTTCGAGACACTTGCTTCCGGCGAAATCGAAACTGCCA 60
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 167 TTTTTATACCGTTTCTATTAATGTTTGGGACTCTTGCTTCCGGCGAAATCGAAACTGCCA 226
Query 61 GATTGAGCCGTAATTTGGGGATTACGTCCAATTTAGGGTTTTCCTGCGGTGGATTTGAAG 120
|| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 227 GACTGAACCGTAATTTGGGGATTACGTCCAATTTAGGGGTTTCCTGCGGTGGATTTGAAG 286
Query 121 ACTTTGCTATGAGATTCGAAGGGGAAAACATGGTGCCACT-CAAAGCTG-A-AG-AGGAG 176
|||||||||||||||||||||||||||||||||||||| | ||||| || | || |||||
Sbjct 287 ACTTTGCTATGAGATTCGAAGGGGAAAACATGGTGCCA-TACAAAGGTGAAGAGCAGGAG 345
Query 177 GAAGAAGACGAAGAAGTTGCGGTCACCGAAACGACGGCGTTTCAGTTGCAACAACCGTTG 236
|| ||||| || |||| | ||| | |||||||||| |||| ||||| |||||||| |||
Sbjct 346 GAGGAAGAAGACCAAGTGGTGGTGAACGAAACGACGCCGTTCCAGTTTCAACAACCTTTG 405
Query 237 TTTCTTCAGCAGCAGCAGCAGAAACTCGTTGTTGGGTATGCTCTGACTTCTAAGAAGAAG 296
|||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 406 TTTC-T--GCAGCAGCAGCAGAAGCTCGTTGTTGGGTATGCTCTGACTTCTAAGAAGAAG 462
Query 297 AAGAGTTTCTTGCAGCCCAAGCTTGAACTTCTTGCTAGAAGAAAAGGCATTTTCTTTGTC 356
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 463 AAGAGTTTCTTGCAGCCCAAGCTTGAACTTCTTGCTAGGAGAAAAGGCATTTTCTTTGTC 522
Query 357 GCCATCGATTTGAACCGGCCCCTATCTGAACAAGGGCCATTTGATGTCGTTTTGCATAAG 416
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 523 GCCATCGATTTGAACCGGCCCCTATCTGAACAAGGGCCATTTGATGTTGTTTTGCATAAG 582
Query 417 TTGCTGGGAAAAGAGTGGGAAGAGGTTATTGAGGATTACCAACAAAAACATCCAGAAGTG 476
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 583 TTGTTGGGAAAAGAGTGGGAAGAGGTTATTGAGGATTACCAACAAAAACACCCAGAAGTG 642
Query 477 ACTGTGCTTGATCCTCCAGGATCAATACAGCGTATATATAACCGACAATCGATGCTTCAG 536
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 643 ACTGTGCTTGATCCTCCAGGATCAATACAGCGTATATATAATCGACAATCGATGCTTCAG 702
Query 537 GGTATGGCAGATTTGAAACTGTCAGATTGCAGTGGCAGCCTTTTTGTTCCAAAGCAAATG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GGTATGGCAGATTTGAAACTGTCAGATTGCAGTGGCAGCCTTTTTGTTCCAAAGCAAATG 762
Query 597 GTCGTCTTGAAAGATTCAGCAGCTAGTGCTGATGAAGTTGTGGAAGCTGGTCTTAAATTT 656
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 763 GTTGTCTTGAAAGATTCAGCAGCTAGTGCTGATGCAGTTGTGGAAGCTGGTCTCAAATTT 822
Query 657 CCACTAGTTGCAAAGCCGCTCTGGATCGATGGAACTGCAAAGTCACATCAATTGTACTTA 716
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 823 CCACTAGTTGCAAAGCCGCTCTGGATCGATGGGACTGCAAAGTCACATCAATTGTACTTG 882
Query 717 GCTTATGACAGGCGCTCGCTTGCAGAACTCGATCCCCCTTTAGTCCTTCAAGAGTTTGTT 776
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 883 GCTTATGACAGGCGCTCGCTTGCAGAGCTTGATCCGCCTTTAGTCCTTCAAGAGTTTGTT 942
Query 777 AATCATGGTGGAGTTATGTTCAAGGTTTTTGTGGTGGGTGATATTATAAAAGTCATGAGA 836
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 943 AATCATGGTGGAGTTATGTTCAAGGTATTTGTGGTGGGTGATGTTATAAAAGTCATGAGA 1002
Query 837 CGGTTTTCTCTACCAAATGTGAGTAATTGTGAAAAAGCCAAAGTTGATGGCGTCTTTCAA 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1003 CGGTTTTCTCTACCAAATGTGAGTAATTGTGAAAAAGCCAAAGTTGATGGCGTCTTCCAA 1062
Query 897 TTCCCAAGGGTTTCATCAGCTGCTGCTTCAGCAGACAATGCAGATTTGGACCCTCGTGTT 956
|||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||
Sbjct 1063 TTCCCAAGGGTTTCATCAGCTGCTGCTTCAGCTGATAACGCAGACTTGGACCCTCGTGTT 1122
Query 957 GCTGAGCTACCTCCAAAGCCCTTCCTCGAGGCGCTGGTGAAAGAGCTAAGAAGCTTATTG 1016
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1123 GCTGAGCTACCTCCAAAGCCTTTCCTCGAGGCGCTTGTGAAAGAGCTAAGAAGCTTATTG 1182
Query 1017 GGACTTCGGCTTTTCAACATAGACATGATCAGGGAACATGGGAGCAAAAACGTGTTTTAT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 GGACTTCGGCTTTTCAACATAGACATGATCAGGGAACATGGGAGCAAAAACGTGTTTTAT 1242
Query 1077 GTTATTGACATCAACTATTTTCCTGGTTATGGAAAGA-TGCCAGATTACGAGCAAGTCTT 1135
||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||
Sbjct 1243 GTTATTGACATCAACTATTTTCCTGGTTACGGAAA-ACTGCCAGACTACGAGCAAGTCTT 1301
Query 1136 TGTAGATTTCTTCCAAAATCTGGCGCAAGTCAAATATAAGAAGAGACAACATTGTAAATG 1195
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1302 TGTAGATTTCTTCCAAAATCTGGCGCAGGTCAAATATAAGAAGAGACAACATTGTAAATG 1361
Query 1196 AAAG 1199
||||
Sbjct 1362 AAAG 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5